Back to Multiple platform build/check report for BioC 3.12
ABCDEFGHIJKLMNO[P]QRSTUVWXYZ

INSTALL report for phenoTest on tokay1

This page was generated on 2021-05-06 12:32:45 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the phenoTest package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1338/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
phenoTest 1.38.0  (landing page)
Evarist Planet
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/phenoTest
Branch: RELEASE_3_12
Last Commit: 8d87466
Last Changed Date: 2020-10-27 10:40:00 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: phenoTest
Version: 1.38.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/phenoTest_1.38.0.tar.gz && rm -rf phenoTest.buildbin-libdir && mkdir phenoTest.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=phenoTest.buildbin-libdir phenoTest_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL phenoTest_1.38.0.zip && rm phenoTest_1.38.0.tar.gz phenoTest_1.38.0.zip
StartedAt: 2021-05-05 19:07:20 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 19:08:22 -0400 (Wed, 05 May 2021)
EllapsedTime: 62.2 seconds
RetCode: 0
Status:   OK   

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/phenoTest_1.38.0.tar.gz && rm -rf phenoTest.buildbin-libdir && mkdir phenoTest.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=phenoTest.buildbin-libdir phenoTest_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL phenoTest_1.38.0.zip && rm phenoTest_1.38.0.tar.gz phenoTest_1.38.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  968k  100  968k    0     0  21.5M      0 --:--:-- --:--:-- --:--:-- 21.4M

install for i386

* installing *source* package 'phenoTest' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'phenoTest'
    finding HTML links ... done
    ClusterPhenoTest                        html  
    ExpressionPhenoTest                     html  
    barplotSignatures-methods               html  
    barplotSignifSignatures-methods         html  
    epheno-class                            html  
    finding level-2 HTML links ... done

    epheno                                  html  
    epheno2html                             html  
    ephenoGetters                           html  
    eset                                    html  
    eset.genelevel                          html  
    eset2genelevel                          html  
    export2CSV-methods                      html  
    export2CSV                              html  
    findCopyNumber                          html  
    genesInArea                             html  
    getEsPositions                          html  
    getGseaSignatures                       html  
    getVars2test-methods                    html  
    getVars2test                            html  
    gsea                                    html  
    gsea.subset                             html  
    gsea2html                               html  
    gseaData-class                          html  
    gseaSignatures-class                    html  
    gseaSignatures-methods                  html  
    gseaSignatures                          html  
    gseaSignaturesSign-class                html  
    gseaSignaturesVar-class                 html  
    gseaSignificance                        html  
    gseaSignificanceSign-class              html  
    gseaSignificanceVar-class               html  
    heatmapPhenoTest-methods                html  
    heatmapPhenoTest                        html  
    pAdjust-methods                         html  
    pAdjust                                 html  
    pca                                     html  
    phenoTest-package                       html  
    plot.gsea                               html  
    plot.gseaSignatures                     html  
    plots4epheno                            html  
    show-methods                            html  
    smoothCoxph                             html  
    summary.gsea                            html  
    summary.gseaSignificance                html  
    write.html                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'phenoTest' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'phenoTest' as phenoTest_1.38.0.zip
* DONE (phenoTest)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'phenoTest' successfully unpacked and MD5 sums checked