| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:32:45 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the phemd package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1336/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| phemd 1.6.0 (landing page) William S Chen
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | ERROR | OK | |||||||||
| Package: phemd |
| Version: 1.6.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/phemd_1.6.0.tar.gz && rm -rf phemd.buildbin-libdir && mkdir phemd.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=phemd.buildbin-libdir phemd_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL phemd_1.6.0.zip && rm phemd_1.6.0.tar.gz phemd_1.6.0.zip |
| StartedAt: 2021-05-05 18:53:41 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 18:55:11 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 90.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/phemd_1.6.0.tar.gz && rm -rf phemd.buildbin-libdir && mkdir phemd.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=phemd.buildbin-libdir phemd_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL phemd_1.6.0.zip && rm phemd_1.6.0.tar.gz phemd_1.6.0.zip
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install for i386
* installing *source* package 'phemd' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'phemd'
finding HTML links ... done
GDM html
Phemd-methods html
Phemd html
aggregateSamples html
all_expn_data html
all_genes html
assignCellClusterNearestNode html
batchIDs html
bindSeuratObj html
celltypeFreqs html
clusterIndividualSamples html
compareSamples html
createDataObj html
drawColnames45 html
embedCells html
gaussianffLocal html
generateGDM html
getArithmeticCentroids html
getCellYield html
getSampleCelltypeFreqs html
getSampleHistsByCluster html
getSampleSizes html
groupSamples html
heatmap_genes html
identifyCentroids html
monocleInfo html
orderCellsMonocle html
phateInfo html
plotCellYield html
plotEmbeddings html
plotGroupedSamplesDmap html
plotHeatmaps html
plotSummaryHistograms html
pooledCells html
printClusterAssignments html
rawExpn html
removeTinySamples html
retrieveRefClusters html
sNames html
selectFeatures html
selectMarkers html
selected_genes html
seuratInfo html
snames_data html
subsampledBool html
subsampledIdx html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'phemd' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'phemd' as phemd_1.6.0.zip
* DONE (phemd)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'phemd' successfully unpacked and MD5 sums checked