Back to Multiple platform build/check report for BioC 3.12
ABCDEFGHIJKLMNO[P]QRSTUVWXYZ

INSTALL report for pcaMethods on tokay1

This page was generated on 2021-05-06 12:32:42 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the pcaMethods package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1314/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pcaMethods 1.82.0  (landing page)
Henning Redestig
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/pcaMethods
Branch: RELEASE_3_12
Last Commit: d500b33
Last Changed Date: 2020-10-27 10:29:37 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: pcaMethods
Version: 1.82.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/pcaMethods_1.82.0.tar.gz && rm -rf pcaMethods.buildbin-libdir && mkdir pcaMethods.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pcaMethods.buildbin-libdir pcaMethods_1.82.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL pcaMethods_1.82.0.zip && rm pcaMethods_1.82.0.tar.gz pcaMethods_1.82.0.zip
StartedAt: 2021-05-05 17:08:34 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 17:09:32 -0400 (Wed, 05 May 2021)
EllapsedTime: 57.6 seconds
RetCode: 0
Status:   OK   

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/pcaMethods_1.82.0.tar.gz && rm -rf pcaMethods.buildbin-libdir && mkdir pcaMethods.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pcaMethods.buildbin-libdir pcaMethods_1.82.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL pcaMethods_1.82.0.zip && rm pcaMethods_1.82.0.tar.gz pcaMethods_1.82.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  171k  100  171k    0     0  9356k      0 --:--:-- --:--:-- --:--:--  9.8M

install for i386

* installing *source* package 'pcaMethods' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c nipals.cpp -o nipals.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o pcaMethods.dll tmp.def RcppExports.o nipals.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/pcaMethods.buildbin-libdir/00LOCK-pcaMethods/00new/pcaMethods/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'loadings' in package 'pcaMethods'
** help
*** installing help indices
  converting help for package 'pcaMethods'
    finding HTML links ... done
    BPCA_dostep                             html  
    BPCA_initmodel                          html  
    DModX-pcaRes-method                     html  
    Q2                                      html  
    R2VX-pcaRes-method                      html  
    R2cum-pcaRes-method                     html  
    RnipalsPca                              html  
    asExprSet                               html  
    biplot-methods                          html  
    bpca                                    html  
    center-pcaRes-method                    html  
    centered-pcaRes-method                  html  
    checkData                               html  
    completeObs-nniRes-method               html  
    cvseg                                   html  
    cvstat-pcaRes-method                    html  
    deletediagonals                         html  
    derrorHierarchic                        html  
    dim.pcaRes                              html  
    errorHierarchic                         html  
    fitted-methods                          html  
    forkNlpcaNet                            html  
    getHierarchicIdx                        html  
    helix                                   html  
    kEstimate                               html  
    kEstimateFast                           html  
    leverage-pcaRes-method                  html  
    lineSearch                              html  
    linr                                    html  
    listPcaMethods                          html  
    llsImpute                               html  
    loadings-ANY-method                     html  
    loadings-pcaRes-method                  html  
    loadings.pcaRes                         html  
    metaboliteData                          html  
    metaboliteDataComplete                  html  
    method-pcaRes-method                    html  
    nObs-pcaRes-method                      html  
    nP-pcaRes-method                        html  
    nPcs-pcaRes-method                      html  
    nVar-pcaRes-method                      html  
    nipalsPca                               html  
    nlpca                                   html  
    nmissing-pcaRes-method                  html  
    nni                                     html  
    nniRes                                  html  
    optiAlgCgd                              html  
    orth                                    html  
    pca                                     html  
    pcaMethods-deprecated                   html  
    pcaMethods                              html  
    pcaNet                                  html  
    pcaRes                                  html  
    plot.pcaRes                             html  
    plotPcs                                 html  
    ppca                                    html  
    predict-methods                         html  
    prep                                    html  
    rediduals-methods                       html  
    repmat                                  html  
    robustPca                               html  
    robustSvd                               html  
    sDev-pcaRes-method                      html  
    scaled-pcaRes-method                    html  
    scl-pcaRes-method                       html  
    scores-pcaRes-method                    html  
    scores.pcaRes                           html  
    show-methods                            html  
    showNniRes                              html  
    simpleEllipse                           html  
    slplot-pcaRes-method                    html  
    sortFeatures                            html  
    summary                                 html  
    svdImpute                               html  
    svdPca                                  html  
    tempFixNas                              html  
    vector2matrices-matrix-method           html  
    vector2matrices-nlpcaNet-method         html  
    wasna-pcaRes-method                     html  
    weightsAccount                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'pcaMethods' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c nipals.cpp -o nipals.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o pcaMethods.dll tmp.def RcppExports.o nipals.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/pcaMethods.buildbin-libdir/pcaMethods/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pcaMethods' as pcaMethods_1.82.0.zip
* DONE (pcaMethods)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'pcaMethods' successfully unpacked and MD5 sums checked