Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:32:42 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the pathwayPCA package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1310/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
pathwayPCA 1.6.3 (landing page) Gabriel Odom
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: pathwayPCA |
Version: 1.6.3 |
Command: rm -rf pathwayPCA.buildbin-libdir && mkdir pathwayPCA.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pathwayPCA.buildbin-libdir pathwayPCA_1.6.3.tar.gz |
StartedAt: 2021-05-06 09:43:50 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 09:44:25 -0400 (Thu, 06 May 2021) |
EllapsedTime: 34.7 seconds |
RetCode: 0 |
Status: OK |
PackageFile: pathwayPCA_1.6.3.zip |
PackageFileSize: 2.915 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf pathwayPCA.buildbin-libdir && mkdir pathwayPCA.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pathwayPCA.buildbin-libdir pathwayPCA_1.6.3.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'pathwayPCA' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'pathwayPCA' finding HTML links ... done AESPCA_pVals html CheckAssay html CheckPwyColl html CheckSampleIDs html Contains html ControlFDR html CreateOmics html CreateOmicsPathway html CreatePathwayCollection html ExtractAESPCs html GumbelMixpValues html IntersectOmicsPwyCollct html JoinPhenoAssay html LoadOntoPCs html OmicsCateg-class html OmicsPathway-class html OmicsReg-class html OmicsSurv-class html OptimGumbelMixParams html PathwaytValues html PermTestCateg html PermTestReg html PermTestSurv html SE2Tidy html SubsetPathwayCollection html SubsetPathwayData html SuperPCA_pVals html TabulatepValues html TransposeAssay html ValidOmicsSurv html WhichPathways html aespca html colonSurv_df html colon_pathwayCollection html coxTrain_fun html getPathPCLs html getPathpVals html get_set_OmicsPathway html get_set_OmicsRegCateg html get_set_OmicsSurv html glmTrain_fun html lars.lsa html mysvd html normalize html olsTrain_fun html pathwayPCA-package html pathway_tControl html pathway_tScores html permuteSamps html print.pathwayCollection html read_gmt html show-OmicsPathway-method html superpc.st html superpc.train html wikipwsHS_Entrez_pathwayCollection html wikipwsHS_Symbol_pathwayCollection html write_gmt html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'pathwayPCA' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'pathwayPCA' as pathwayPCA_1.6.3.zip * DONE (pathwayPCA)