Back to Multiple platform build/check report for BioC 3.12
ABCDEFGHIJKLMN[O]PQRSTUVWXYZ

INSTALL report for oncomix on tokay1

This page was generated on 2021-05-06 12:32:37 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the oncomix package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1262/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
oncomix 1.12.0  (landing page)
Daniel Pique
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/oncomix
Branch: RELEASE_3_12
Last Commit: fb053e2
Last Changed Date: 2020-10-27 11:29:31 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: oncomix
Version: 1.12.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/oncomix_1.12.0.tar.gz && rm -rf oncomix.buildbin-libdir && mkdir oncomix.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=oncomix.buildbin-libdir oncomix_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL oncomix_1.12.0.zip && rm oncomix_1.12.0.tar.gz oncomix_1.12.0.zip
StartedAt: 2021-05-05 17:41:31 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 17:42:08 -0400 (Wed, 05 May 2021)
EllapsedTime: 37.4 seconds
RetCode: 0
Status:   OK   

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/oncomix_1.12.0.tar.gz && rm -rf oncomix.buildbin-libdir && mkdir oncomix.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=oncomix.buildbin-libdir oncomix_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL oncomix_1.12.0.zip && rm oncomix_1.12.0.tar.gz oncomix_1.12.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1203k  100 1203k    0     0  14.0M      0 --:--:-- --:--:-- --:--:-- 14.1M

install for i386

* installing *source* package 'oncomix' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'oncomix'
    finding HTML links ... done
    exprNmlIsof                             html  
    exprTumIsof                             html  
    mixModelParams                          html  
    oncoMixBimodal                          html  
    oncoMixIdeal                            html  
    oncoMixTraditionalDE                    html  
    plotGeneHist                            html  
    queryRes                                html  
    scatterMixPlot                          html  
    toMatrix                                html  
    topGeneQuants                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'oncomix' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'oncomix' as oncomix_1.12.0.zip
* DONE (oncomix)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'oncomix' successfully unpacked and MD5 sums checked