Diego Gallego
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/nucleR |
| Branch: RELEASE_3_12 |
| Last Commit: 4f0d071 |
| Last Changed Date: 2020-11-15 11:56:00 -0400 (Sun, 15 Nov 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:32:34 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the nucleR package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1239/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| nucleR 2.22.0 (landing page) Diego Gallego
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: nucleR |
| Version: 2.22.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/nucleR_2.22.0.tar.gz && rm -rf nucleR.buildbin-libdir && mkdir nucleR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=nucleR.buildbin-libdir nucleR_2.22.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL nucleR_2.22.0.zip && rm nucleR_2.22.0.tar.gz nucleR_2.22.0.zip |
| StartedAt: 2021-05-05 17:48:01 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 17:48:52 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 51.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/nucleR_2.22.0.tar.gz && rm -rf nucleR.buildbin-libdir && mkdir nucleR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=nucleR.buildbin-libdir nucleR_2.22.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL nucleR_2.22.0.zip && rm nucleR_2.22.0.tar.gz nucleR_2.22.0.zip
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install for i386
* installing *source* package 'nucleR' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'nucleR'
finding HTML links ... done
controlCorrection html
coverage.rpm html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpayfBjr/R.INSTALL1f7c4acb42de/nucleR/man/coverage.rpm.Rd:31: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpayfBjr/R.INSTALL1f7c4acb42de/nucleR/man/coverage.rpm.Rd:32: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpayfBjr/R.INSTALL1f7c4acb42de/nucleR/man/coverage.rpm.Rd:19: file link 'GenomicRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpayfBjr/R.INSTALL1f7c4acb42de/nucleR/man/coverage.rpm.Rd:19: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpayfBjr/R.INSTALL1f7c4acb42de/nucleR/man/coverage.rpm.Rd:48: file link 'coverage' in package 'IRanges' does not exist and so has been treated as a topic
dot-fftRegion html
dot-getThreshold html
dot-loadFiles html
dot-loadPairedBam html
dot-loadSingleBam html
dot-mid html
dot-processStrand html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpayfBjr/R.INSTALL1f7c4acb42de/nucleR/man/dot-processStrand.Rd:16: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
dot-unlist_as_integer html
dot-vectorizedAll html
dot-xlapply html
export.bed html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpayfBjr/R.INSTALL1f7c4acb42de/nucleR/man/export.bed.Rd:41: file link 'IRanges' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpayfBjr/R.INSTALL1f7c4acb42de/nucleR/man/export.bed.Rd:42: file link 'IRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpayfBjr/R.INSTALL1f7c4acb42de/nucleR/man/export.bed.Rd:42: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
export.wig html
filterFFT html
fragmentLenDetect html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpayfBjr/R.INSTALL1f7c4acb42de/nucleR/man/fragmentLenDetect.Rd:41: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
mergeCalls html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpayfBjr/R.INSTALL1f7c4acb42de/nucleR/man/mergeCalls.Rd:19: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpayfBjr/R.INSTALL1f7c4acb42de/nucleR/man/mergeCalls.Rd:31: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
nucleR-package html
nucleosome_htseq html
nucleosome_tiling html
pcKeepCompDetect html
peakDetection html
peakScoring html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpayfBjr/R.INSTALL1f7c4acb42de/nucleR/man/peakScoring.Rd:74: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
plotPeaks html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpayfBjr/R.INSTALL1f7c4acb42de/nucleR/man/plotPeaks.Rd:95: file link 'geom_rect' in package 'ggplot2' does not exist and so has been treated as a topic
processReads html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpayfBjr/R.INSTALL1f7c4acb42de/nucleR/man/processReads.Rd:21: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpayfBjr/R.INSTALL1f7c4acb42de/nucleR/man/processReads.Rd:46: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpayfBjr/R.INSTALL1f7c4acb42de/nucleR/man/processReads.Rd:36: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpayfBjr/R.INSTALL1f7c4acb42de/nucleR/man/processReads.Rd:106: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
processTilingArray html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpayfBjr/R.INSTALL1f7c4acb42de/nucleR/man/processTilingArray.Rd:129: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
readBAM html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpayfBjr/R.INSTALL1f7c4acb42de/nucleR/man/readBAM.Rd:16: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
readBowtie html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpayfBjr/R.INSTALL1f7c4acb42de/nucleR/man/readBowtie.Rd:16: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
syntheticNucMap html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'nucleR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'nucleR' as nucleR_2.22.0.zip
* DONE (nucleR)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'nucleR' successfully unpacked and MD5 sums checked