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INSTALL report for myvariant on tokay1

This page was generated on 2021-05-06 12:32:25 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the myvariant package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1193/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
myvariant 1.20.0  (landing page)
Adam Mark, Chunlei Wu
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/myvariant
Branch: RELEASE_3_12
Last Commit: 719e034
Last Changed Date: 2020-10-27 11:07:28 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: myvariant
Version: 1.20.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/myvariant_1.20.0.tar.gz && rm -rf myvariant.buildbin-libdir && mkdir myvariant.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=myvariant.buildbin-libdir myvariant_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL myvariant_1.20.0.zip && rm myvariant_1.20.0.tar.gz myvariant_1.20.0.zip
StartedAt: 2021-05-05 18:10:16 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 18:11:28 -0400 (Wed, 05 May 2021)
EllapsedTime: 71.8 seconds
RetCode: 0
Status:   OK   

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/myvariant_1.20.0.tar.gz && rm -rf myvariant.buildbin-libdir && mkdir myvariant.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=myvariant.buildbin-libdir myvariant_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL myvariant_1.20.0.zip && rm myvariant_1.20.0.tar.gz myvariant_1.20.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 17337  100 17337    0     0  1191k      0 --:--:-- --:--:-- --:--:-- 1302k

install for i386

* installing *source* package 'myvariant' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'myvariant'
    finding HTML links ... done
    MyVariant-class                         html  
    MyVariant                               html  
    formatHgvs                              html  
    finding level-2 HTML links ... done

    formatSingleHgvs                        html  
    getVariant                              html  
    getVariants                             html  
    metadata                                html  
    myvariant-package                       html  
    queryVariant                            html  
    queryVariants                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'myvariant' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'myvariant' as myvariant_1.20.0.zip
* DONE (myvariant)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'myvariant' successfully unpacked and MD5 sums checked