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INSTALL report for maigesPack on tokay1

This page was generated on 2021-05-06 12:32:06 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the maigesPack package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 992/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
maigesPack 1.54.0  (landing page)
Gustavo H. Esteves
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/maigesPack
Branch: RELEASE_3_12
Last Commit: 5910e59
Last Changed Date: 2020-10-27 10:32:10 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: maigesPack
Version: 1.54.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/maigesPack_1.54.0.tar.gz && rm -rf maigesPack.buildbin-libdir && mkdir maigesPack.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=maigesPack.buildbin-libdir maigesPack_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL maigesPack_1.54.0.zip && rm maigesPack_1.54.0.tar.gz maigesPack_1.54.0.zip
StartedAt: 2021-05-05 17:07:09 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 17:07:50 -0400 (Wed, 05 May 2021)
EllapsedTime: 41.1 seconds
RetCode: 0
Status:   OK   

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/maigesPack_1.54.0.tar.gz && rm -rf maigesPack.buildbin-libdir && mkdir maigesPack.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=maigesPack.buildbin-libdir maigesPack_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL maigesPack_1.54.0.zip && rm maigesPack_1.54.0.tar.gz maigesPack_1.54.0.zip
###
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100  857k  100  857k    0     0  32.6M      0 --:--:-- --:--:-- --:--:-- 33.4M

install for i386

* installing *source* package 'maigesPack' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Minfo.c -o Minfo.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c bootstrapT.c -o bootstrapT.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c register.c -o register.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c robustCorr.c -o robustCorr.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c stats.c -o stats.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o maigesPack.dll tmp.def Minfo.o bootstrapT.o register.o robustCorr.o stats.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/maigesPack.buildbin-libdir/00LOCK-maigesPack/00new/maigesPack/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'maigesPack'
    finding HTML links ... done
    MI                                      html  
    activeMod                               html  
    activeModScoreHTML                      html  
    activeNet                               html  
    activeNetScoreHTML                      html  
    addGeneGrps                             html  
    addPaths                                html  
    bootstrapCor                            html  
    bootstrapMI                             html  
    bootstrapT                              html  
    boxplot-methods                         html  
    bracketMethods                          html  
    calcA                                   html  
    calcW                                   html  
    classifyKNN                             html  
    classifyKNNsc                           html  
    classifyLDA                             html  
    classifyLDAsc                           html  
    classifySVM                             html  
    classifySVMsc                           html  
    coerce-methods                          html  
    compCorr                                html  
    contrastsFitM                           html  
    createMaigesRaw                         html  
    createTDMS                              html  
    deGenes2by2BootT                        html  
    deGenes2by2Ttest                        html  
    deGenes2by2Wilcox                       html  
    deGenesANOVA                            html  
    designANOVA                             html  
    dim-methods                             html  
    gastro                                  html  
    getLabels                               html  
    heatmapsM                               html  
    hierM                                   html  
    hierMde                                 html  
    image-methods                           html  
    kmeansM                                 html  
    kmeansMde                               html  
    loadData                                html  
    maiges-class                            html  
    maigesANOVA-class                       html  
    maigesActMod-class                      html  
    maigesActNet-class                      html  
    maigesClass-class                       html  
    maigesDE-class                          html  
    maigesDEcluster-class                   html  
    maigesPreRaw-class                      html  
    maigesRaw-class                         html  
    maigesRelNetB-class                     html  
    maigesRelNetM-class                     html  
    normLoc                                 html  
    normOLIN                                html  
    normRepLoess                            html  
    normScaleLimma                          html  
    normScaleMarray                         html  
    plot-methods                            html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpshJhyQ/R.INSTALL14d820fe689c/maigesPack/man/plot-methods.Rd:19: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpshJhyQ/R.INSTALL14d820fe689c/maigesPack/man/plot-methods.Rd:83: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpshJhyQ/R.INSTALL14d820fe689c/maigesPack/man/plot-methods.Rd:198: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic
    plotGenePair                            html  
    print-methods                           html  
    relNet2TGF                              html  
    relNetworkB                             html  
    relNetworkM                             html  
    robustCorr                              html  
    selSpots                                html  
    show-methods                            html  
    somM                                    html  
    somMde                                  html  
    summarizeReplicates                     html  
    summary-methods                         html  
    tableClass                              html  
    tablesDE                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'maigesPack' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Minfo.c -o Minfo.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c bootstrapT.c -o bootstrapT.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c register.c -o register.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c robustCorr.c -o robustCorr.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c stats.c -o stats.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o maigesPack.dll tmp.def Minfo.o bootstrapT.o register.o robustCorr.o stats.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/maigesPack.buildbin-libdir/maigesPack/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'maigesPack' as maigesPack_1.54.0.zip
* DONE (maigesPack)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'maigesPack' successfully unpacked and MD5 sums checked