Aedin Culhane
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/made4 |
| Branch: RELEASE_3_12 |
| Last Commit: 89d0a81 |
| Last Changed Date: 2020-10-27 10:25:28 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:32:06 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the made4 package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 988/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| made4 1.64.0 (landing page) Aedin Culhane
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: made4 |
| Version: 1.64.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/made4_1.64.0.tar.gz && rm -rf made4.buildbin-libdir && mkdir made4.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=made4.buildbin-libdir made4_1.64.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL made4_1.64.0.zip && rm made4_1.64.0.tar.gz made4_1.64.0.zip |
| StartedAt: 2021-05-05 17:42:58 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 17:43:44 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 46.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/made4_1.64.0.tar.gz && rm -rf made4.buildbin-libdir && mkdir made4.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=made4.buildbin-libdir made4_1.64.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL made4_1.64.0.zip && rm made4_1.64.0.tar.gz made4_1.64.0.zip
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install for i386
* installing *source* package 'made4' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'made4'
finding HTML links ... done
NCI60 html
asDataFrame html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpS0IHZQ/R.INSTALL1e346a70558e/made4/man/asDataFrame.Rd:14: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpS0IHZQ/R.INSTALL1e346a70558e/made4/man/asDataFrame.Rd:24: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
bet.coinertia html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpS0IHZQ/R.INSTALL1e346a70558e/made4/man/bet.coinertia.Rd:14: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpS0IHZQ/R.INSTALL1e346a70558e/made4/man/bet.coinertia.Rd:21: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
between.graph html
bga html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpS0IHZQ/R.INSTALL1e346a70558e/made4/man/bga.Rd:16: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
bga.jackknife html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpS0IHZQ/R.INSTALL1e346a70558e/made4/man/bga.jackknife.Rd:37: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic
bga.suppl html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpS0IHZQ/R.INSTALL1e346a70558e/made4/man/bga.suppl.Rd:13: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpS0IHZQ/R.INSTALL1e346a70558e/made4/man/bga.suppl.Rd:19: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpS0IHZQ/R.INSTALL1e346a70558e/made4/man/bga.suppl.Rd:45: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpS0IHZQ/R.INSTALL1e346a70558e/made4/man/bga.suppl.Rd:63: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic
checkfac html
chime3D html
cia html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpS0IHZQ/R.INSTALL1e346a70558e/made4/man/cia.Rd:14: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpS0IHZQ/R.INSTALL1e346a70558e/made4/man/cia.Rd:20: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
commonMap html
comparelists html
do3d html
dudi.rwcoa html
forrwcoa html
genes html
genes1d html
getcol html
graph1D html
heatplot html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpS0IHZQ/R.INSTALL1e346a70558e/made4/man/heatplot.Rd:20: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
html3D html
isDataFrame html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpS0IHZQ/R.INSTALL1e346a70558e/made4/man/isDataFrame.Rd:14: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpS0IHZQ/R.INSTALL1e346a70558e/made4/man/isDataFrame.Rd:28: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
jmol3D html
khan html
ord html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpS0IHZQ/R.INSTALL1e346a70558e/made4/man/ord.Rd:14: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
overview html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpS0IHZQ/R.INSTALL1e346a70558e/made4/man/overview.Rd:11: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
plotarrays html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpS0IHZQ/R.INSTALL1e346a70558e/made4/man/plotarrays.Rd:47: file link 's.groups' in package 'made4' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpS0IHZQ/R.INSTALL1e346a70558e/made4/man/plotarrays.Rd:48: file link 's.match.col' in package 'made4' does not exist and so has been treated as a topic
plotgenes html
prettyDend html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpS0IHZQ/R.INSTALL1e346a70558e/made4/man/prettyDend.Rd:12: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
randomiser html
s.var html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpS0IHZQ/R.INSTALL1e346a70558e/made4/man/s.var.Rd:65: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpS0IHZQ/R.INSTALL1e346a70558e/made4/man/s.var.Rd:65: file link 'plot.cia' in package 'made4' does not exist and so has been treated as a topic
sumstats html
suppl html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpS0IHZQ/R.INSTALL1e346a70558e/made4/man/suppl.Rd:18: file link 'ExpressionSet-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpS0IHZQ/R.INSTALL1e346a70558e/made4/man/suppl.Rd:39: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpS0IHZQ/R.INSTALL1e346a70558e/made4/man/suppl.Rd:48: file link 'plot.bga' in package 'made4' does not exist and so has been treated as a topic
topgenes html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'made4' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'made4' as made4_1.64.0.zip
* DONE (made4)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'made4' successfully unpacked and MD5 sums checked