Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:31:47 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the hypeR package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 855/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
hypeR 1.6.0 (landing page) Anthony Federico
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: hypeR |
Version: 1.6.0 |
Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:hypeR.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings hypeR_1.6.0.tar.gz |
StartedAt: 2021-05-06 03:43:14 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 03:47:47 -0400 (Thu, 06 May 2021) |
EllapsedTime: 273.1 seconds |
RetCode: 1 |
Status: ERROR |
CheckDir: hypeR.Rcheck |
Warnings: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:hypeR.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings hypeR_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/hypeR.Rcheck' * using R version 4.0.5 (2021-03-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'hypeR/DESCRIPTION' ... OK * this is package 'hypeR' version '1.6.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'hypeR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .dots_multi_plot : <anonymous>: no visible binding for global variable 'pval' .dots_multi_plot : <anonymous>: no visible binding for global variable 'fdr' .dots_multi_plot : <anonymous>: no visible binding for global variable 'label' .dots_multi_plot: no visible global function definition for 'head' .dots_multi_plot: no visible binding for global variable 'significance' .dots_multi_plot: no visible binding for global variable 'signature' .dots_multi_plot: no visible binding for global variable 'label' .dots_multi_plot: no visible binding for global variable 'size' .dots_plot: no visible binding for global variable 'pval' .dots_plot: no visible binding for global variable 'fdr' .dots_plot: no visible binding for global variable 'significance' .dots_plot: no visible binding for global variable 'size' .enrichment_map: no visible binding for global variable 'pval' .enrichment_map: no visible binding for global variable 'fdr' .find_members: no visible binding for global variable 'from' .find_members: no visible binding for global variable 'to' .hiearchy_map: no visible binding for global variable 'pval' .hiearchy_map: no visible binding for global variable 'fdr' .hiearchy_map : <anonymous>: no visible binding for global variable 'label' .hyper_enrichment: no visible global function definition for 'is' .ks_enrichment: no visible global function definition for 'is' enrichr_available: no visible binding for global variable '.' ggvenn: no visible binding for global variable 'x' ggvenn: no visible binding for global variable 'y' hyp_dots: no visible global function definition for 'is' hyp_emap: no visible global function definition for 'is' hyp_hmap: no visible global function definition for 'is' hyp_show: no visible global function definition for 'is' hyp_to_excel: no visible global function definition for 'is' hyp_to_rmd: no visible global function definition for 'is' hyp_to_rmd : <anonymous>: no visible global function definition for 'is' hyp_to_table: no visible global function definition for 'is' hyp_to_table: no visible global function definition for 'write.table' hypeR: no visible global function definition for 'is' hypeR: no visible global function definition for 'packageVersion' hypeR: no visible global function definition for 'head' msigdb_available: no visible binding for global variable 'gs_cat' msigdb_available: no visible binding for global variable 'gs_subcat' msigdb_download: no visible binding for global variable 'gs_name' msigdb_download: no visible binding for global variable 'gene_symbol' msigdb_download: no visible binding for global variable '.' msigdb_version: no visible global function definition for 'packageVersion' rctbl_build: no visible global function definition for 'is' Undefined global functions or variables: . fdr from gene_symbol gs_cat gs_name gs_subcat head is label packageVersion pval signature significance size to write.table x y Consider adding importFrom("methods", "is", "signature") importFrom("utils", "head", "packageVersion", "write.table") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods'). * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... ERROR Running examples in 'hypeR-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: enrichr_available > ### Title: Get enrichr available genesets > ### Aliases: enrichr_available > > ### ** Examples > > enrichr_available() Error in curl::curl_fetch_memory(url, handle = handle) : schannel: next InitializeSecurityContext failed: SEC_E_ILLEGAL_MESSAGE (0x80090326) - This error usually occurs when a fatal SSL/TLS alert is received (e.g. handshake failed). Calls: enrichr_available ... request_fetch -> request_fetch.write_memory -> <Anonymous> Execution halted ** running examples for arch 'x64' ... ERROR Running examples in 'hypeR-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: enrichr_available > ### Title: Get enrichr available genesets > ### Aliases: enrichr_available > > ### ** Examples > > enrichr_available() Error in curl::curl_fetch_memory(url, handle = handle) : schannel: next InitializeSecurityContext failed: SEC_E_ILLEGAL_MESSAGE (0x80090326) - This error usually occurs when a fatal SSL/TLS alert is received (e.g. handshake failed). Calls: enrichr_available ... request_fetch -> request_fetch.write_memory -> <Anonymous> Execution halted * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 ERRORs, 1 NOTE See 'C:/Users/biocbuild/bbs-3.12-bioc/meat/hypeR.Rcheck/00check.log' for details.
hypeR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/hypeR_1.6.0.tar.gz && rm -rf hypeR.buildbin-libdir && mkdir hypeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=hypeR.buildbin-libdir hypeR_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL hypeR_1.6.0.zip && rm hypeR_1.6.0.tar.gz hypeR_1.6.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 412k 100 412k 0 0 14.9M 0 --:--:-- --:--:-- --:--:-- 15.4M install for i386 * installing *source* package 'hypeR' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'hypeR' finding HTML links ... done clean_genesets html dot-check_overlap html dot-dots_multi_plot html dot-dots_plot html dot-enrichment_map html dot-find_members html dot-format_str html dot-hiearchy_map html dot-hyper_enrichment html dot-jaccard_similarity html dot-ks_enrichment html dot-kstest html dot-overlap_similarity html dot-reverselog_trans html dot-string_args html enrichr_available html enrichr_connect html enrichr_download html enrichr_gsets html enrichr_urls html genesets_Server html genesets_UI html ggempty html ggeplot html ggvenn html gsets html hyp html hyp_dots html hyp_emap html hyp_hmap html hyp_show html hyp_to_excel html hyp_to_rmd html hyp_to_table html hypeR html hyperdb_info html hyperdb_rgsets html limma html msigdb_available html msigdb_check_species html msigdb_download html msigdb_gsets html msigdb_info html msigdb_species html msigdb_version html multihyp html pvector html rctbl_build html rctbl_hyp html rctbl_mhyp html rgsets html wgcna html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'hypeR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'hypeR' as hypeR_1.6.0.zip * DONE (hypeR) * installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library' package 'hypeR' successfully unpacked and MD5 sums checked
hypeR.Rcheck/tests_i386/testthat.Rout R version 4.0.5 (2021-03-31) -- "Shake and Throw" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(magrittr) Attaching package: 'magrittr' The following objects are masked from 'package:testthat': equals, is_less_than, not > library(hypeR) > > test_check("hypeR") Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 inline R code fragments label: setup (with options) List of 2 $ echo : logi FALSE $ message: logi FALSE ordinary text without R code label: 1 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code "C:/PROGRA~2/Pandoc/pandoc" +RTS -K512m -RTS hyp.1.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output hyp.1.html --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=united --include-in-header "C:\Users\biocbuild\bbs-3.12-bioc\tmpdir\RtmpaytXoh\rmarkdown-str28147475d61.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --variable code_folding=hide --variable code_menu=1 Signature 1 Signature 2 Signature 3 inline R code fragments label: setup (with options) List of 2 $ echo : logi FALSE $ message: logi FALSE ordinary text without R code label: 1 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 2 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 3 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code "C:/PROGRA~2/Pandoc/pandoc" +RTS -K512m -RTS multihyp.1.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output multihyp.1.html --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=united --include-in-header "C:\Users\biocbuild\bbs-3.12-bioc\tmpdir\RtmpaytXoh\rmarkdown-str2814265a2d00.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --variable code_folding=hide --variable code_menu=1 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 inline R code fragments label: setup (with options) List of 2 $ echo : logi FALSE $ message: logi FALSE ordinary text without R code label: 1 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 2 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 3 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 4 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 5 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 6 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 7 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 8 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 9 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code "C:/PROGRA~2/Pandoc/pandoc" +RTS -K512m -RTS lmultihyp.1.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output lmultihyp.1.html --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=united --include-in-header "C:\Users\biocbuild\bbs-3.12-bioc\tmpdir\RtmpaytXoh\rmarkdown-str281479f04801.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --variable code_folding=hide --variable code_menu=1 inline R code fragments label: setup (with options) List of 2 $ echo : logi FALSE $ message: logi FALSE ordinary text without R code label: 1 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code "C:/PROGRA~2/Pandoc/pandoc" +RTS -K512m -RTS hyp.2.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output hyp.2.html --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=united --include-in-header "C:\Users\biocbuild\bbs-3.12-bioc\tmpdir\RtmpaytXoh\rmarkdown-str2814305b249a.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --variable code_folding=hide --variable code_menu=1 Signature 1 Signature 2 Signature 3 inline R code fragments label: setup (with options) List of 2 $ echo : logi FALSE $ message: logi FALSE ordinary text without R code label: 1 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 2 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 3 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code "C:/PROGRA~2/Pandoc/pandoc" +RTS -K512m -RTS multihyp.2.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output multihyp.2.html --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=united --include-in-header "C:\Users\biocbuild\bbs-3.12-bioc\tmpdir\RtmpaytXoh\rmarkdown-str281474585cc1.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --variable code_folding=hide --variable code_menu=1 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 inline R code fragments label: setup (with options) List of 2 $ echo : logi FALSE $ message: logi FALSE ordinary text without R code label: 1 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 2 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 3 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 4 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 5 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 6 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 7 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 8 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 9 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code "C:/PROGRA~2/Pandoc/pandoc" +RTS -K512m -RTS lmultihyp.2.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output lmultihyp.2.html --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=united --include-in-header "C:\Users\biocbuild\bbs-3.12-bioc\tmpdir\RtmpaytXoh\rmarkdown-str28145188556e.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --variable code_folding=hide --variable code_menu=1 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 inline R code fragments label: setup (with options) List of 2 $ echo : logi FALSE $ message: logi FALSE ordinary text without R code label: 1 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 2 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 3 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 4 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 5 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 6 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 7 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 8 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 9 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code "C:/PROGRA~2/Pandoc/pandoc" +RTS -K512m -RTS lmultihyp.3.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output lmultihyp.3.html --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=united --include-in-header "C:\Users\biocbuild\bbs-3.12-bioc\tmpdir\RtmpaytXoh\rmarkdown-str28144d2a248d.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --variable code_folding=hide --variable code_menu=1 inline R code fragments label: setup (with options) List of 2 $ echo : logi FALSE $ message: logi FALSE ordinary text without R code label: 1 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code "C:/PROGRA~2/Pandoc/pandoc" +RTS -K512m -RTS hyp.4.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output hyp.4.html --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=united --include-in-header 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--self-contained --variable bs3=TRUE --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=united --include-in-header "C:\Users\biocbuild\bbs-3.12-bioc\tmpdir\RtmpaytXoh\rmarkdown-str28145674766a.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --variable code_folding=hide --variable code_menu=1 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 [ FAIL 0 | WARN 0 | SKIP 0 | PASS 409 ] > > proc.time() user system elapsed 42.96 2.67 78.03 |
hypeR.Rcheck/tests_x64/testthat.Rout R version 4.0.5 (2021-03-31) -- "Shake and Throw" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(magrittr) Attaching package: 'magrittr' The following objects are masked from 'package:testthat': equals, is_less_than, not > library(hypeR) > > test_check("hypeR") Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 inline R code fragments label: setup (with options) List of 2 $ echo : logi FALSE $ message: logi FALSE ordinary text without R code label: 1 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code "C:/PROGRA~2/Pandoc/pandoc" +RTS -K512m -RTS hyp.1.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output 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+RTS -K512m -RTS lmultihyp.3.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output lmultihyp.3.html --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=united --include-in-header "C:\Users\biocbuild\bbs-3.12-bioc\tmpdir\RtmpiypcBM\rmarkdown-str11343aa5dec.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --variable code_folding=hide --variable code_menu=1 inline R code fragments label: setup (with options) List of 2 $ echo : logi FALSE $ message: logi FALSE ordinary text without R code label: 1 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code "C:/PROGRA~2/Pandoc/pandoc" +RTS -K512m -RTS hyp.4.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output hyp.4.html --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=united --include-in-header "C:\Users\biocbuild\bbs-3.12-bioc\tmpdir\RtmpiypcBM\rmarkdown-str1134662a4d40.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --variable code_folding=hide --variable code_menu=1 Signature 1 Signature 2 Signature 3 inline R code fragments label: setup (with options) List of 2 $ echo : logi FALSE $ message: logi FALSE ordinary text without R code label: 1 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 2 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 3 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code "C:/PROGRA~2/Pandoc/pandoc" +RTS -K512m -RTS multihyp.4.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output multihyp.4.html --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=united --include-in-header "C:\Users\biocbuild\bbs-3.12-bioc\tmpdir\RtmpiypcBM\rmarkdown-str1134c105f14.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --variable code_folding=hide --variable code_menu=1 Signature 1 Signature 2 Signature 3 inline R code fragments label: setup (with options) List of 2 $ echo : logi FALSE $ message: logi FALSE ordinary text without R code label: 1 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 2 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 3 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 4 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code "C:/PROGRA~2/Pandoc/pandoc" +RTS -K512m -RTS combo.1.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output combo.1.html --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=united --include-in-header "C:\Users\biocbuild\bbs-3.12-bioc\tmpdir\RtmpiypcBM\rmarkdown-str11344fbb3c87.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --variable code_folding=hide --variable code_menu=1 inline R code fragments label: setup (with options) List of 2 $ echo : logi FALSE $ message: logi FALSE ordinary text without R code label: 1 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 2 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 3 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 4 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code "C:/PROGRA~2/Pandoc/pandoc" +RTS -K512m -RTS combo.2.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output combo.2.html --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=united --include-in-header "C:\Users\biocbuild\bbs-3.12-bioc\tmpdir\RtmpiypcBM\rmarkdown-str113467196116.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --variable code_folding=hide --variable code_menu=1 inline R code fragments label: setup (with options) List of 2 $ echo : logi FALSE $ message: logi FALSE ordinary text without R code label: 1 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 2 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 3 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: 4 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code label: unnamed-chunk-1 ordinary text without R code "C:/PROGRA~2/Pandoc/pandoc" +RTS -K512m -RTS combo.3.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output combo.3.html --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.12-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=united --include-in-header "C:\Users\biocbuild\bbs-3.12-bioc\tmpdir\RtmpiypcBM\rmarkdown-str113451701628.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --variable code_folding=hide --variable code_menu=1 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 [ FAIL 0 | WARN 0 | SKIP 0 | PASS 409 ] > > proc.time() user system elapsed 53.18 3.31 77.67 |
hypeR.Rcheck/examples_i386/hypeR-Ex.timings
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hypeR.Rcheck/examples_x64/hypeR-Ex.timings
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