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INSTALL report for genphen on tokay1

This page was generated on 2021-05-06 12:31:29 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the genphen package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 725/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
genphen 1.18.0  (landing page)
Simo Kitanovski
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/genphen
Branch: RELEASE_3_12
Last Commit: 7474de2
Last Changed Date: 2020-10-27 11:13:00 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    ERROR  skipped
tokay1Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: genphen
Version: 1.18.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/genphen_1.18.0.tar.gz && rm -rf genphen.buildbin-libdir && mkdir genphen.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genphen.buildbin-libdir genphen_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL genphen_1.18.0.zip && rm genphen_1.18.0.tar.gz genphen_1.18.0.zip
StartedAt: 2021-05-05 17:26:54 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 17:30:01 -0400 (Wed, 05 May 2021)
EllapsedTime: 186.3 seconds
RetCode: 0
Status:   OK   

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/genphen_1.18.0.tar.gz && rm -rf genphen.buildbin-libdir && mkdir genphen.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genphen.buildbin-libdir genphen_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL genphen_1.18.0.zip && rm genphen_1.18.0.tar.gz genphen_1.18.0.zip
###
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100 53246  100 53246    0     0  3210k      0 --:--:-- --:--:-- --:--:-- 3466k

install for i386

* installing *source* package 'genphen' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'genphen'
    finding HTML links ... done
    dichotomous.phenotype.saap              html  
    genotype.saap                           html  
    genotype.saap.msa                       html  
    genotype.snp                            html  
    genotype.snp.msa                        html  
    phenotype.saap                          html  
    phenotype.snp                           html  
    runDiagnostics                          html  
    runGenphen                              html  
    runPhyloBiasCheck                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'genphen' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'genphen' as genphen_1.18.0.zip
* DONE (genphen)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'genphen' successfully unpacked and MD5 sums checked