Julien Gagneur
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/genomeIntervals |
| Branch: RELEASE_3_12 |
| Last Commit: 519c416 |
| Last Changed Date: 2020-10-27 10:35:22 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:31:27 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the genomeIntervals package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 712/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| genomeIntervals 1.46.0 (landing page) Julien Gagneur
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: genomeIntervals |
| Version: 1.46.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/genomeIntervals_1.46.0.tar.gz && rm -rf genomeIntervals.buildbin-libdir && mkdir genomeIntervals.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genomeIntervals.buildbin-libdir genomeIntervals_1.46.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL genomeIntervals_1.46.0.zip && rm genomeIntervals_1.46.0.tar.gz genomeIntervals_1.46.0.zip |
| StartedAt: 2021-05-05 17:18:44 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 17:19:38 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 54.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/genomeIntervals_1.46.0.tar.gz && rm -rf genomeIntervals.buildbin-libdir && mkdir genomeIntervals.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genomeIntervals.buildbin-libdir genomeIntervals_1.46.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL genomeIntervals_1.46.0.zip && rm genomeIntervals_1.46.0.tar.gz genomeIntervals_1.46.0.zip
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install for i386
* installing *source* package 'genomeIntervals' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'genomeIntervals'
finding HTML links ... done
GenomeIntervals-constructor html
Genome_intervals-class html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpm2mDtp/R.INSTALL1a385707566a/genomeIntervals/man/Genome_intervals-class.Rd:110: file link 'width' in package 'IRanges' does not exist and so has been treated as a topic
Genome_intervals-coercion-methods html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpm2mDtp/R.INSTALL1a385707566a/genomeIntervals/man/Genome_intervals-coercion-methods.Rd:42: file link 'readGff3' in package 'genomeIntervals' does not exist and so has been treated as a topic
Genome_intervals-deprecated html
Genome_intervals-ordering html
Genome_intervals_stranded-class html
c.Genome_intervals html
core_annotated html
distance_to_nearest-methods html
gen_ints html
genomeIntervals-package html
genomeIntervals-readGff3 html
getGffAttribute html
interval_overlap-methods html
interval_set_operations-methods html
parseGffAttributes html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'genomeIntervals' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'genomeIntervals' as genomeIntervals_1.46.0.zip
* DONE (genomeIntervals)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'genomeIntervals' successfully unpacked and MD5 sums checked