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###
### Running command:
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###   rm -rf flowStats.buildbin-libdir && mkdir flowStats.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowStats.buildbin-libdir flowStats_4.2.0.tar.gz
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install for i386

* installing *source* package 'flowStats' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'flowStats'
    finding HTML links ... done
    BackGating                              html  
    ITN                                     html  
    addName-methods                         html  
    autoGate                                html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp29xUPf/R.INSTALL4158d4f663f/flowStats/man/autoGate.Rd:21: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp29xUPf/R.INSTALL4158d4f663f/flowStats/man/autoGate.Rd:25: file link 'norm2Filter' in package 'flowStats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp29xUPf/R.INSTALL4158d4f663f/flowStats/man/autoGate.Rd:54: file link 'norm2Filter' in package 'flowStats' does not exist and so has been treated as a topic
    binByRef                                html  
    calcPBChiSquare                         html  
    calcPearsonChi                          html  
    curv1Filter-class                       html  
    finding level-2 HTML links ... done

    curv2Filter-class                       html  
    curvPeaks                               html  
    density1d                               html  
    fdPar                                   html  
    flowStats-package                       html  
    gate_singlet                            html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp29xUPf/R.INSTALL4158d4f663f/flowStats/man/gate_singlet.Rd:65: file link 'polygonGate' in package 'flowCore' does not exist and so has been treated as a topic
    gaussNorm                               html  
    gpaSet                                  html  
    iProcrustes                             html  
    idFeaturesByBackgating                  html  
    landmarkMatrix                          html  
    lymphGate                               html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp29xUPf/R.INSTALL4158d4f663f/flowStats/man/lymphGate.Rd:79: file link 'norm2Filter' in package 'flowStats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp29xUPf/R.INSTALL4158d4f663f/flowStats/man/lymphGate.Rd:83: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp29xUPf/R.INSTALL4158d4f663f/flowStats/man/lymphGate.Rd:133: file link 'ellipsoidGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp29xUPf/R.INSTALL4158d4f663f/flowStats/man/lymphGate.Rd:141: file link 'norm2Filter' in package 'flowStats' does not exist and so has been treated as a topic
    norm2Filter-class                       html  
    normQA                                  html  
    normalize                               html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp29xUPf/R.INSTALL4158d4f663f/flowStats/man/normalize.Rd:58: file link 'ncdfFlowSet' in package 'ncdfFlow' does not exist and so has been treated as a topic
    overton_like                            html  
    plotBins                                html  
    proBin                                  html  
    quadrantGate                            html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp29xUPf/R.INSTALL4158d4f663f/flowStats/man/quadrantGate.Rd:71: file link 'quadGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp29xUPf/R.INSTALL4158d4f663f/flowStats/man/quadrantGate.Rd:79: file link 'quadGate' in package 'flowCore' does not exist and so has been treated as a topic
    rangeGate                               html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp29xUPf/R.INSTALL4158d4f663f/flowStats/man/rangeGate.Rd:135: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp29xUPf/R.INSTALL4158d4f663f/flowStats/man/rangeGate.Rd:145: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic
    spillover-flowSet                       html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp29xUPf/R.INSTALL4158d4f663f/flowStats/man/spillover-flowSet.Rd:41: file link 'norm2Filter' in package 'flowStats' does not exist and so has been treated as a topic
    spillover_match-flowSet                 html  
    spillover_ng-flowSet                    html  
    warpSet                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'flowStats' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowStats' as flowStats_4.2.0.zip
* DONE (flowStats)