Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:31:05 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the farms package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 589/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
farms 1.42.0 (landing page) Djork-Arne Clevert
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: farms |
Version: 1.42.0 |
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/farms_1.42.0.tar.gz && rm -rf farms.buildbin-libdir && mkdir farms.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=farms.buildbin-libdir farms_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL farms_1.42.0.zip && rm farms_1.42.0.tar.gz farms_1.42.0.zip |
StartedAt: 2021-05-05 17:08:06 -0400 (Wed, 05 May 2021) |
EndedAt: 2021-05-05 17:08:40 -0400 (Wed, 05 May 2021) |
EllapsedTime: 33.6 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/farms_1.42.0.tar.gz && rm -rf farms.buildbin-libdir && mkdir farms.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=farms.buildbin-libdir farms_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL farms_1.42.0.zip && rm farms_1.42.0.tar.gz farms_1.42.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 91019 100 91019 0 0 2285k 0 --:--:-- --:--:-- --:--:-- 2339k install for i386 * installing *source* package 'farms' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'farms' finding HTML links ... done INI_Calls-class html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/INI_Calls-class.rd:6: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic INIcalls-methods html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/INIcalls-methods.rd:20: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/INIcalls-methods.rd:22: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/INIcalls-methods.rd:14: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic dummy html expFarms html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/expFarms.rd:5: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/expFarms.rd:35: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic generateExprVal.method.farms html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/generateExprVal.method.farms.rd:39: file link 'li.wong' in package 'affy' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/generateExprVal.method.farms.rd:39: file link 'medianpolish' in package 'affy' does not exist and so has been treated as a topic getI_Eset-methods html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/getI_Eset-methods.rd:8: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/getI_Eset-methods.rd:18: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic getI_ProbeSets-methods html getNI_Eset-methods html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/getNI_Eset-methods.rd:10: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/getNI_Eset-methods.rd:20: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic getNI_ProbeSets-methods html lFarms html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/lFarms.rd:6: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/lFarms.rd:32: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic plot-methods html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/plot-methods.rd:20: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic qFarms html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/qFarms.rd:6: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/qFarms.rd:33: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic summary-methods html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpgpq3uE/R.INSTALL16b029062504/farms/man/summary-methods.rd:19: file link 'exprSet-class' in package 'Biobase' does not exist and so has been treated as a topic testAffyBatch html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'farms' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'farms' as farms_1.42.0.zip * DONE (farms) * installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library' package 'farms' successfully unpacked and MD5 sums checked