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CHECK report for enrichplot on tokay1

This page was generated on 2021-05-06 12:31:03 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the enrichplot package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 550/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
enrichplot 1.10.2  (landing page)
Guangchuang Yu
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/enrichplot
Branch: RELEASE_3_12
Last Commit: 77ee04f
Last Changed Date: 2021-01-28 04:32:59 -0400 (Thu, 28 Jan 2021)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: enrichplot
Version: 1.10.2
Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:enrichplot.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings enrichplot_1.10.2.tar.gz
StartedAt: 2021-05-06 02:33:19 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 02:37:55 -0400 (Thu, 06 May 2021)
EllapsedTime: 275.8 seconds
RetCode: 0
Status:   OK   
CheckDir: enrichplot.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:enrichplot.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings enrichplot_1.10.2.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/enrichplot.Rcheck'
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'enrichplot/DESCRIPTION' ... OK
* this is package 'enrichplot' version '1.10.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'enrichplot' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
gseaplot          3.87   0.22   18.16
ridgeplot         3.58   0.07   17.74
upsetplot-methods 1.95   0.02    7.76
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
gseaplot  4.03   0.17   19.34
ridgeplot 3.64   0.20   17.09
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

enrichplot.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/enrichplot_1.10.2.tar.gz && rm -rf enrichplot.buildbin-libdir && mkdir enrichplot.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=enrichplot.buildbin-libdir enrichplot_1.10.2.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL enrichplot_1.10.2.zip && rm enrichplot_1.10.2.tar.gz enrichplot_1.10.2.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 38532  100 38532    0     0  2265k      0 --:--:-- --:--:-- --:--:-- 2351k

install for i386

* installing *source* package 'enrichplot' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'enrichplot'
    finding HTML links ... done
    barplot.enrichResult                    html  
    cnetplot                                html  
    color_palette                           html  
    dotplot-methods                         html  
    dotplot                                 html  
    emapplot                                html  
    emapplot_cluster                        html  
    fortify                                 html  
    get_igraph                              html  
    get_w                                   html  
    ggtable                                 html  
    goplot                                  html  
    gsInfo                                  html  
    gseadist                                html  
    gseaplot                                html  
    gseaplot2                               html  
    gsearank                                html  
    has_pairsim                             html  
    heatplot                                html  
    list2graph                              html  
    pairwise_termsim                        html  
    plotting.clusterProfile                 html  
    pmcplot                                 html  
    reexports                               html  
    ridgeplot                               html  
    upsetplot-methods                       html  
    wordcloud_i                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'enrichplot' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'enrichplot' as enrichplot_1.10.2.zip
* DONE (enrichplot)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'enrichplot' successfully unpacked and MD5 sums checked

Tests output


Example timings

enrichplot.Rcheck/examples_i386/enrichplot-Ex.timings

nameusersystemelapsed
barplot.enrichResult0.940.121.07
cnetplot2.120.222.36
color_palette000
dotplot1.750.021.77
emapplot2.750.062.81
emapplot_cluster000
gseaplot 3.87 0.2218.16
heatplot0.990.000.98
pairwise_termsim000
ridgeplot 3.58 0.0717.74
upsetplot-methods1.950.027.76

enrichplot.Rcheck/examples_x64/enrichplot-Ex.timings

nameusersystemelapsed
barplot.enrichResult1.040.061.11
cnetplot2.250.142.41
color_palette000
dotplot1.030.021.05
emapplot1.600.081.67
emapplot_cluster000
gseaplot 4.03 0.1719.34
heatplot0.930.010.95
pairwise_termsim000
ridgeplot 3.64 0.2017.09
upsetplot-methods1.180.021.19