Haichao Wang
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/cfDNAPro |
| Branch: RELEASE_3_12 |
| Last Commit: 600d01c |
| Last Changed Date: 2020-11-02 09:10:21 -0400 (Mon, 02 Nov 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:30:11 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the cfDNAPro package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 266/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| cfDNAPro 1.0.0 (landing page) Haichao Wang
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: cfDNAPro |
| Version: 1.0.0 |
| Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:cfDNAPro.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings cfDNAPro_1.0.0.tar.gz |
| StartedAt: 2021-05-06 01:18:40 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 01:22:02 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 201.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: cfDNAPro.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:cfDNAPro.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings cfDNAPro_1.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/cfDNAPro.Rcheck' * using R version 4.0.5 (2021-03-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'cfDNAPro/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'cfDNAPro' version '1.0.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'cfDNAPro' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
cfDNAPro.Rcheck/00install.out
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### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/cfDNAPro_1.0.0.tar.gz && rm -rf cfDNAPro.buildbin-libdir && mkdir cfDNAPro.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cfDNAPro.buildbin-libdir cfDNAPro_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL cfDNAPro_1.0.0.zip && rm cfDNAPro_1.0.0.tar.gz cfDNAPro_1.0.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
1 666k 1 9977 0 0 25905 0 0:00:26 --:--:-- 0:00:26 25914
100 666k 100 666k 0 0 1706k 0 --:--:-- --:--:-- --:--:-- 1709k
install for i386
* installing *source* package 'cfDNAPro' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'cfDNAPro'
finding HTML links ... done
callMetrics html
callMode html
callPeakDistance html
callSize html
callValleyDistance html
examplePath html
plotAllToOne html
plotMetrics html
plotMode html
plotModesummary html
plotPeakDistance html
plotSinglegroup html
plotValleyDistance html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'cfDNAPro' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cfDNAPro' as cfDNAPro_1.0.0.zip
* DONE (cfDNAPro)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'cfDNAPro' successfully unpacked and MD5 sums checked
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cfDNAPro.Rcheck/tests_i386/testthat.Rout
R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(cfDNAPro)
Loading required package: magrittr
Attaching package: 'magrittr'
The following objects are masked from 'package:testthat':
equals, is_less_than, not
>
> test_check("cfDNAPro")
setting default input_type to picard.
setting default outfmt to df.
setting default input_type to picard.
setting default input_type to picard.
setting default limit to c(35,135).
setting default outfmt to df.
setting the mincount to 0.
setting default input_type to picard.
setting default limit to c(35,135).
setting default outfmt to df.
Setting default mincount to 0.
setting default input_type to picard.
setting default input_type to picard.
setting default outfmt to df.
setting default input_type to picard.
setting default input_type to picard.
setting default limit to c(35,135).
setting default outfmt to df.
setting the mincount to 0.
setting default input_type to picard.
setting default limit to c(35,135).
setting default outfmt to df.
Setting default mincount to 0.
setting default input_type to picard.
setting default mincount as 0.
setting default horizontal lines: y = 81, 112, 170.
setting the mincount to 0.
setting the xlim to c(7,13).
setting the mincount to 0.
setting the xlim to c(7,13).
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
>
> proc.time()
user system elapsed
12.85 0.87 13.71
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cfDNAPro.Rcheck/tests_x64/testthat.Rout
R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(cfDNAPro)
Loading required package: magrittr
Attaching package: 'magrittr'
The following objects are masked from 'package:testthat':
equals, is_less_than, not
>
> test_check("cfDNAPro")
setting default input_type to picard.
setting default outfmt to df.
setting default input_type to picard.
setting default input_type to picard.
setting default limit to c(35,135).
setting default outfmt to df.
setting the mincount to 0.
setting default input_type to picard.
setting default limit to c(35,135).
setting default outfmt to df.
Setting default mincount to 0.
setting default input_type to picard.
setting default input_type to picard.
setting default outfmt to df.
setting default input_type to picard.
setting default input_type to picard.
setting default limit to c(35,135).
setting default outfmt to df.
setting the mincount to 0.
setting default input_type to picard.
setting default limit to c(35,135).
setting default outfmt to df.
Setting default mincount to 0.
setting default input_type to picard.
setting default mincount as 0.
setting default horizontal lines: y = 81, 112, 170.
setting the mincount to 0.
setting the xlim to c(7,13).
setting the mincount to 0.
setting the xlim to c(7,13).
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
>
> proc.time()
user system elapsed
11.43 0.35 11.78
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cfDNAPro.Rcheck/examples_i386/cfDNAPro-Ex.timings
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cfDNAPro.Rcheck/examples_x64/cfDNAPro-Ex.timings
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