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INSTALL report for banocc on tokay1

This page was generated on 2020-08-13 11:42:12 -0400 (Thu, 13 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE banocc PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 108/1885HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
banocc 1.13.0
George Weingart
Snapshot Date: 2020-08-12 14:52:00 -0400 (Wed, 12 Aug 2020)
URL: https://git.bioconductor.org/packages/banocc
Branch: master
Last Commit: b3e1613
Last Changed Date: 2020-04-27 15:06:53 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] ERROR  skipped  skipped 
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: banocc
Version: 1.13.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/banocc_1.13.0.tar.gz && rm -rf banocc.buildbin-libdir && mkdir banocc.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=banocc.buildbin-libdir banocc_1.13.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL banocc_1.13.0.zip && rm banocc_1.13.0.tar.gz banocc_1.13.0.zip
StartedAt: 2020-08-12 17:01:57 -0400 (Wed, 12 Aug 2020)
EndedAt: 2020-08-12 17:03:55 -0400 (Wed, 12 Aug 2020)
EllapsedTime: 118.9 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/banocc_1.13.0.tar.gz && rm -rf banocc.buildbin-libdir && mkdir banocc.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=banocc.buildbin-libdir banocc_1.13.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL banocc_1.13.0.zip && rm banocc_1.13.0.tar.gz banocc_1.13.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  9 25.3M    9 2384k    0     0  37.2M      0 --:--:-- --:--:-- --:--:-- 39.4M
100 25.3M  100 25.3M    0     0  87.8M      0 --:--:-- --:--:-- --:--:-- 88.8M

install for i386

* installing *source* package 'banocc' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'banocc'
    finding HTML links ... done
    banocc                                  html  
    banocc_model                            html  
    compositions_hard_null                  html  
    compositions_neg_spike                  html  
    compositions_null                       html  
    compositions_pos_spike                  html  
    counts_hard_null                        html  
    counts_neg_spike                        html  
    counts_null                             html  
    counts_pos_spike                        html  
    get_banocc_output                       html  
    run_banocc                              html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpCw1MUz/R.INSTALLd9416c05d09/banocc/man/run_banocc.Rd:56: file link 'sampling' in package 'rstan' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpCw1MUz/R.INSTALLd9416c05d09/banocc/man/run_banocc.Rd:77: file link 'sampling' in package 'rstan' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'banocc' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'banocc' as banocc_1.13.0.zip
* DONE (banocc)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'banocc' successfully unpacked and MD5 sums checked