Zoppoli Pietro
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/TDARACNE |
| Branch: RELEASE_3_12 |
| Last Commit: c8e5b94 |
| Last Changed Date: 2020-10-27 10:39:56 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:33:56 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the TDARACNE package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1846/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| TDARACNE 1.40.0 (landing page) Zoppoli Pietro
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: TDARACNE |
| Version: 1.40.0 |
| Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:TDARACNE.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings TDARACNE_1.40.0.tar.gz |
| StartedAt: 2021-05-06 07:29:08 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 07:30:24 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 76.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: TDARACNE.Rcheck |
| Warnings: 0 |
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### Running command:
###
### C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:TDARACNE.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings TDARACNE_1.40.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/TDARACNE.Rcheck'
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'TDARACNE/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'TDARACNE' version '1.40.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'TDARACNE' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Found the following CITATION file in a non-standard place:
inst/CITATION.txt
Most likely 'inst/CITATION' should be used instead.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls to packages already attached by Depends:
'Biobase' 'GenKern' 'Rgraphviz'
Please remove these calls from your code.
Packages in Depends field not imported from:
'Biobase' 'GenKern' 'Rgraphviz'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
CalcMI_time2: no visible global function definition for 'dpik'
CalcMI_time2: no visible global function definition for 'KernSec'
CalcMI_time2: no visible global function definition for 'KernSur'
MItimeThreshperm2: no visible global function definition for 'sd'
PercentileC: no visible global function definition for 'quantile'
TDARACNE: no visible global function definition for 'exprs'
TDARACNE: no visible global function definition for 'as'
TDARACNEdataPublished: no visible global function definition for 'data'
TDARACNEdataPublished: no visible binding for global variable
'dataYeast'
TDARACNEdataPublished: no visible binding for global variable
'dataSOSmean'
TDARACNEdataPublished: no visible binding for global variable
'dataIRMAon'
TDARACNEdataPublished: no visible binding for global variable
'threshIRMAon'
TDARACNEdataPublished: no visible binding for global variable
'threshSOSmean'
TDARACNEdataPublished: no visible binding for global variable
'threshYeast'
bootstrap: no visible global function definition for 'runif'
bootstrap: no visible global function definition for 'rgeom'
plotRgraphviz: no visible global function definition for 'new'
Undefined global functions or variables:
KernSec KernSur as data dataIRMAon dataSOSmean dataYeast dpik exprs
new quantile rgeom runif sd threshIRMAon threshSOSmean threshYeast
Consider adding
importFrom("methods", "as", "new")
importFrom("stats", "quantile", "rgeom", "runif", "sd")
importFrom("utils", "data")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
TDARACNEdataPublished 10.8 0.1 10.89
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
TDARACNEdataPublished 10.5 0.1 10.61
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 4 NOTEs
See
'C:/Users/biocbuild/bbs-3.12-bioc/meat/TDARACNE.Rcheck/00check.log'
for details.
TDARACNE.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/TDARACNE_1.40.0.tar.gz && rm -rf TDARACNE.buildbin-libdir && mkdir TDARACNE.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TDARACNE.buildbin-libdir TDARACNE_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL TDARACNE_1.40.0.zip && rm TDARACNE_1.40.0.tar.gz TDARACNE_1.40.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 19816 100 19816 0 0 1124k 0 --:--:-- --:--:-- --:--:-- 1209k
install for i386
* installing *source* package 'TDARACNE' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'TDARACNE'
finding HTML links ... done
CalcMI_time2 html
DPI2_TDAracne html
DPI_TDAracne html
IcEfx html
MItimeIcE2 html
MItimeThreshperm2 html
PercentileC html
RangeRank2 html
TDARACNE html
TDARACNEdataPublished html
ToTheGraph_timeShiftmax2 html
bootstrap html
dataIRMAoff html
dataIRMAon html
dataSOSmean html
dataYeast html
plotRgraphviz html
saveTime html
threshIRMAon html
threshSOSmean html
threshYeast html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'TDARACNE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TDARACNE' as TDARACNE_1.40.0.zip
* DONE (TDARACNE)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'TDARACNE' successfully unpacked and MD5 sums checked
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TDARACNE.Rcheck/examples_i386/TDARACNE-Ex.timings
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TDARACNE.Rcheck/examples_x64/TDARACNE-Ex.timings
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