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INSTALL report for SeqArray on malbec1

This page was generated on 2021-05-06 12:29:04 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the SeqArray package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1675/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SeqArray 1.30.0  (landing page)
Xiuwen Zheng
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/SeqArray
Branch: RELEASE_3_12
Last Commit: 6a9e919
Last Changed Date: 2020-10-27 10:49:50 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: SeqArray
Version: 1.30.0
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL SeqArray
StartedAt: 2021-05-05 16:10:43 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 16:11:22 -0400 (Wed, 05 May 2021)
EllapsedTime: 38.7 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL SeqArray
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* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘SeqArray’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.12-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c ConvGDS2VCF.cpp -o ConvGDS2VCF.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.12-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c ConvToGDS.cpp -o ConvToGDS.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.12-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c ConvVCF2GDS.cpp -o ConvVCF2GDS.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.12-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c FileMerge.cpp -o FileMerge.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.12-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c GetData.cpp -o GetData.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.12-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c Index.cpp -o Index.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.12-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c LinkSNPRelate.cpp -o LinkSNPRelate.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.12-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c Methods.cpp -o Methods.o
gcc -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.12-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c R_SeqArray.c -o R_SeqArray.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.12-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c ReadBySample.cpp -o ReadBySample.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.12-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c ReadByUnit.cpp -o ReadByUnit.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.12-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c ReadByVariant.cpp -o ReadByVariant.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.12-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c SeqArray.cpp -o SeqArray.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.12-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c pkg_test.cpp -o pkg_test.o
gcc -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.12-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c samtools_ext.c -o samtools_ext.o
gcc -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.12-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c vectorization.c -o vectorization.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.12-bioc/R/lib -L/usr/local/lib -o SeqArray.so ConvGDS2VCF.o ConvToGDS.o ConvVCF2GDS.o FileMerge.o GetData.o Index.o LinkSNPRelate.o Methods.o R_SeqArray.o ReadBySample.o ReadByUnit.o ReadByVariant.o SeqArray.o pkg_test.o samtools_ext.o vectorization.o -L/home/biocbuild/bbs-3.12-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.12-bioc/R/library/00LOCK-SeqArray/00new/SeqArray/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SeqArray)