Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:33:45 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the SPONGE package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1777/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SPONGE 1.12.0 (landing page) Markus List
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: SPONGE |
Version: 1.12.0 |
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/SPONGE_1.12.0.tar.gz && rm -rf SPONGE.buildbin-libdir && mkdir SPONGE.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SPONGE.buildbin-libdir SPONGE_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL SPONGE_1.12.0.zip && rm SPONGE_1.12.0.tar.gz SPONGE_1.12.0.zip |
StartedAt: 2021-05-05 17:19:33 -0400 (Wed, 05 May 2021) |
EndedAt: 2021-05-05 17:20:29 -0400 (Wed, 05 May 2021) |
EllapsedTime: 56.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/SPONGE_1.12.0.tar.gz && rm -rf SPONGE.buildbin-libdir && mkdir SPONGE.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SPONGE.buildbin-libdir SPONGE_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL SPONGE_1.12.0.zip && rm SPONGE_1.12.0.tar.gz SPONGE_1.12.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 4103k 100 4103k 0 0 73.3M 0 --:--:-- --:--:-- --:--:-- 74.2M install for i386 Warning in untar2(tarfile, files, list, exdir, restore_times) : failed to copy 'SPONGE/vignettes/SPONGE.Rmd' to 'SPONGE/README.md' * installing *source* package 'SPONGE' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SPONGE' finding HTML links ... done ceRNA_interactions html check_and_convert_expression_data html fn_elasticnet html fn_gene_miRNA_F_test html fn_get_model_coef html fn_get_rss html fn_get_shared_miRNAs html gene_expr html genes_pairwise_combinations html mir_expr html mir_interactions html mircode_ensg html mircode_symbol html precomputed_cov_matrices html precomputed_null_model html sample_zero_mscor_cov html sample_zero_mscor_data html sponge html sponge_build_null_model html sponge_compute_p_values html sponge_edge_centralities html sponge_gene_miRNA_interaction_filter html sponge_network html sponge_node_centralities html sponge_plot_network html sponge_plot_network_centralities html sponge_plot_simulation_results html sponge_run_benchmark html sponge_subsampling html targetscan_ensg html targetscan_symbol html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 Warning in untar2(tarfile, files, list, exdir, restore_times) : failed to copy 'SPONGE/vignettes/SPONGE.Rmd' to 'SPONGE/README.md' * installing *source* package 'SPONGE' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'SPONGE' as SPONGE_1.12.0.zip * DONE (SPONGE) * installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library' package 'SPONGE' successfully unpacked and MD5 sums checked