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BUILD BIN report for SNPhood on tokay1

This page was generated on 2021-05-06 12:33:41 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the SNPhood package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1746/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SNPhood 1.20.0  (landing page)
Christian Arnold
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/SNPhood
Branch: RELEASE_3_12
Last Commit: 3ee61dc
Last Changed Date: 2020-10-27 11:09:04 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: SNPhood
Version: 1.20.0
Command: rm -rf SNPhood.buildbin-libdir && mkdir SNPhood.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SNPhood.buildbin-libdir SNPhood_1.20.0.tar.gz
StartedAt: 2021-05-06 10:09:39 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 10:11:49 -0400 (Thu, 06 May 2021)
EllapsedTime: 129.7 seconds
RetCode: 0
Status:   OK   
PackageFile: SNPhood_1.20.0.zip
PackageFileSize: 6.969 MiB

Command output

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###
### Running command:
###
###   rm -rf SNPhood.buildbin-libdir && mkdir SNPhood.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SNPhood.buildbin-libdir SNPhood_1.20.0.tar.gz
###
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install for i386

* installing *source* package 'SNPhood' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SNPhood'
    finding HTML links ... done
    SNPhood-class                           html  
    SNPhood                                 html  
    SNPhood.o                               html  
    analyzeSNPhood                          html  
    finding level-2 HTML links ... done

    annotation-methods                      html  
    annotationBins                          html  
    annotationBins2                         html  
    annotationDatasets                      html  
    annotationReadGroups                    html  
    annotationRegions                       html  
    associateGenotypes                      html  
    bins-methods                            html  
    changeObjectIntegrityChecking           html  
    collectFiles                            html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpyac60S/R.INSTALL3f10441636a7/SNPhood/man/collectFiles.Rd:46: file link 'path' in package 'Rsamtools' does not exist and so has been treated as a topic
    convertToAllelicFractions               html  
    counts-method                           html  
    datasets-methods                        html  
    deleteDatasets                          html  
    deleteReadGroups                        html  
    deleteRegions                           html  
    enrichment-methods                      html  
    getDefaultParameterList                 html  
    mergeReadGroups                         html  
    parameters-methods                      html  
    plotAllelicBiasResults                  html  
    plotAllelicBiasResultsOverview          html  
    plotAndCalculateCorrelationDatasets     html  
    plotAndCalculateWeakAndStrongGenotype   html  
    plotAndClusterMatrix                    html  
    plotAndSummarizeAllelicBiasTest         html  
    plotBinCounts                           html  
    plotClusterAverage                      html  
    plotFDRResults                          html  
    plotGenotypesPerCluster                 html  
    plotGenotypesPerSNP                     html  
    plotRegionCounts                        html  
    readGroups-methods                      html  
    regions-methods                         html  
    renameBins                              html  
    renameDatasets                          html  
    renameReadGroups                        html  
    renameRegions                           html  
    results                                 html  
    testForAllelicBiases                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SNPhood' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SNPhood' as SNPhood_1.20.0.zip
* DONE (SNPhood)