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BUILD BIN report for RpsiXML on merida1

This page was generated on 2021-05-06 12:36:34 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the RpsiXML package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1573/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RpsiXML 2.32.0  (landing page)
Jitao David Zhang
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/RpsiXML
Branch: RELEASE_3_12
Last Commit: b9fbebe
Last Changed Date: 2020-10-27 10:34:07 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: RpsiXML
Version: 2.32.0
Command: rm -rf RpsiXML.buildbin-libdir && mkdir RpsiXML.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh RpsiXML_2.32.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R RpsiXML.buildbin-libdir
StartedAt: 2021-05-06 09:51:23 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 09:52:09 -0400 (Thu, 06 May 2021)
EllapsedTime: 45.7 seconds
RetCode: 0
Status:   OK  
PackageFile: RpsiXML_2.32.0.tgz
PackageFileSize: 2.936 MiB

Command output

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### Running command:
###
###   rm -rf RpsiXML.buildbin-libdir && mkdir RpsiXML.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh RpsiXML_2.32.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R RpsiXML.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=RpsiXML.buildbin-libdir RpsiXML_2.32.0.tar.gz'
>>>>>>> 

* installing *source* package ‘RpsiXML’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package ‘Biobase’ for request: ‘listlen’ when loading ‘RpsiXML’
No methods found in package ‘annotate’ for requests: ‘pubmed’, ‘buildPubMedAbst’ when loading ‘RpsiXML’
Note: in method for ‘head’ with signature ‘x="ANY"’: expanding the
signature to include omitted arguments in definition: x = "missing"
Note: in method for ‘tail’ with signature ‘x="ANY"’: expanding the
signature to include omitted arguments in definition: x = "missing"
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package ‘Biobase’ for request: ‘listlen’ when loading ‘RpsiXML’
No methods found in package ‘annotate’ for requests: ‘pubmed’, ‘buildPubMedAbst’ when loading ‘RpsiXML’
** testing if installed package can be loaded from final location
No methods found in package ‘Biobase’ for request: ‘listlen’ when loading ‘RpsiXML’
No methods found in package ‘annotate’ for requests: ‘pubmed’, ‘buildPubMedAbst’ when loading ‘RpsiXML’
** testing if installed package keeps a record of temporary installation path
* DONE (RpsiXML)