Back to Multiple platform build/check report for BioC 3.12
ABCDEFGHIJKLMNOPQ[R]STUVWXYZ

BUILD BIN report for RchyOptimyx on tokay1

This page was generated on 2021-05-06 12:33:08 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the RchyOptimyx package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1469/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RchyOptimyx 2.30.0  (landing page)
Adrin Jalali , Nima Aghaeepour
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/RchyOptimyx
Branch: RELEASE_3_12
Last Commit: 68c269c
Last Changed Date: 2020-10-27 10:45:22 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository

Summary

Package: RchyOptimyx
Version: 2.30.0
Command: rm -rf RchyOptimyx.buildbin-libdir && mkdir RchyOptimyx.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RchyOptimyx.buildbin-libdir RchyOptimyx_2.30.0.tar.gz
StartedAt: 2021-05-06 09:53:16 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 09:53:53 -0400 (Thu, 06 May 2021)
EllapsedTime: 37.2 seconds
RetCode: 0
Status:   OK   
PackageFile: RchyOptimyx_2.30.0.zip
PackageFileSize: 1017 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf RchyOptimyx.buildbin-libdir && mkdir RchyOptimyx.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RchyOptimyx.buildbin-libdir RchyOptimyx_2.30.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'RchyOptimyx' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RchyOptimyx.cpp -o RchyOptimyx.o
In file included from graehl/graph.h:279,
                 from RchyOptimyx.cpp:13:
graehl/kbest.h: In function 'void buildSidetracksHeap(int, int)':
graehl/kbest.h:322:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
   } else
     ^~~~
graehl/kbest.h:324:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
    pathGraph[state] = newTreeHeapAdd(prev, pathGraph[state]);
    ^~~~~~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c dataRead.cpp -o dataRead.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c mystring.cpp -o mystring.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c numberGenerator.cpp -o numberGenerator.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o RchyOptimyx.dll tmp.def RchyOptimyx.o dataRead.o mystring.o numberGenerator.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/RchyOptimyx.buildbin-libdir/00LOCK-RchyOptimyx/00new/RchyOptimyx/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'merge' in package 'RchyOptimyx'
** help
*** installing help indices
  converting help for package 'RchyOptimyx'
    finding HTML links ... done
    HIVData                                 html  
    RchyOptimyx-package                     html  
    RchyOptimyx                             html  
    merge                                   html  
    plot                                    html  
    summary-methods                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'RchyOptimyx' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RchyOptimyx.cpp -o RchyOptimyx.o
In file included from graehl/graph.h:279,
                 from RchyOptimyx.cpp:13:
graehl/kbest.h: In function 'void buildSidetracksHeap(int, int)':
graehl/kbest.h:322:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
   } else
     ^~~~
graehl/kbest.h:324:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
    pathGraph[state] = newTreeHeapAdd(prev, pathGraph[state]);
    ^~~~~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c dataRead.cpp -o dataRead.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c mystring.cpp -o mystring.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c numberGenerator.cpp -o numberGenerator.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o RchyOptimyx.dll tmp.def RchyOptimyx.o dataRead.o mystring.o numberGenerator.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/RchyOptimyx.buildbin-libdir/RchyOptimyx/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RchyOptimyx' as RchyOptimyx_2.30.0.zip
* DONE (RchyOptimyx)