Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:36:10 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the PrecisionTrialDrawer package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1379/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
PrecisionTrialDrawer 1.6.0 (landing page) Giorgio Melloni
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: PrecisionTrialDrawer |
Version: 1.6.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PrecisionTrialDrawer.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PrecisionTrialDrawer_1.6.0.tar.gz |
StartedAt: 2021-05-06 04:52:33 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 04:57:02 -0400 (Thu, 06 May 2021) |
EllapsedTime: 268.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: PrecisionTrialDrawer.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:PrecisionTrialDrawer.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings PrecisionTrialDrawer_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/PrecisionTrialDrawer.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘PrecisionTrialDrawer/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘PrecisionTrialDrawer’ version ‘1.6.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘PrecisionTrialDrawer’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed newCancerPanel 7.157 0.128 21.154 panelDesigner 6.385 0.079 17.378 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
PrecisionTrialDrawer.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL PrecisionTrialDrawer ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘PrecisionTrialDrawer’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘toJSON’ from package ‘jsonlite’ in package ‘googleVis’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Creating a generic function for ‘toJSON’ from package ‘jsonlite’ in package ‘googleVis’ ** testing if installed package can be loaded from final location Creating a generic function for ‘toJSON’ from package ‘jsonlite’ in package ‘googleVis’ ** testing if installed package keeps a record of temporary installation path * DONE (PrecisionTrialDrawer)
PrecisionTrialDrawer.Rcheck/PrecisionTrialDrawer-Ex.timings
name | user | system | elapsed | |
CancerPanel-class | 0.001 | 0.001 | 0.001 | |
PrecisionTrialDrawer-package | 0.521 | 0.006 | 0.528 | |
appendRepo | 0.344 | 0.019 | 0.366 | |
coocMutexPlot | 1.748 | 0.047 | 1.796 | |
coveragePlot | 0.197 | 0.013 | 0.212 | |
coverageStackPlot | 0.236 | 0.023 | 0.260 | |
cpArguments | 0.026 | 0.006 | 0.033 | |
cpData | 0.029 | 0.004 | 0.034 | |
cpDataSubset | 0.012 | 0.002 | 0.015 | |
cpDesign | 0.030 | 0.005 | 0.034 | |
cpFreq | 0.300 | 0.040 | 0.341 | |
cpObj | 0.257 | 0.011 | 0.268 | |
cpObj2 | 0.070 | 0.006 | 0.075 | |
dataExtractor | 0.397 | 0.008 | 0.405 | |
filterFusions | 0.362 | 0.016 | 0.378 | |
filterMutations | 1.097 | 0.021 | 1.120 | |
getAlterations | 0.192 | 0.006 | 0.426 | |
newCancerPanel | 7.157 | 0.128 | 21.154 | |
panelDesigner | 6.385 | 0.079 | 17.378 | |
panelOptimizer | 0.002 | 0.000 | 0.002 | |
panelexample | 0.009 | 0.003 | 0.012 | |
propPowerSampleSize | 1.197 | 0.017 | 1.215 | |
saturationPlot | 1.577 | 0.058 | 1.639 | |
showCancerStudy | 0.014 | 0.001 | 0.037 | |
showTumorType | 0.053 | 0.001 | 0.074 | |
subsetAlterations | 0.569 | 0.023 | 0.593 | |
survPowerSampleSize | 0.670 | 0.005 | 0.677 | |
survPowerSampleSize1Arm | 0.752 | 0.005 | 0.759 | |