Multiple platform build/check report for BioC 3.12 - BUILD report for PloGO2 on tokay1

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### Running command:
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###   chmod a+r PloGO2 -R && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data PloGO2
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* checking for file 'PloGO2/DESCRIPTION' ... OK
* preparing 'PloGO2':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'PloGO2_vignette.Rnw' using Sweave
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid


Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows


Loading required package: GOstats
Loading required package: Category
Loading required package: Matrix

Attaching package: 'Matrix'

The following object is masked from 'package:S4Vectors':

    expand

Loading required package: graph

Attaching package: 'GOstats'

The following object is masked from 'package:AnnotationDbi':

    makeGOGraph

--- finished re-building 'PloGO2_vignette.Rnw'

--- re-building 'PloGO2_with_WGNCA_vignette.Rnw' using Sweave
Loading required package: dynamicTreeCut
Loading required package: fastcluster

Attaching package: 'fastcluster'

The following object is masked from 'package:stats':

    hclust


Attaching package: 'WGCNA'

The following object is masked from 'package:IRanges':

    cor

The following object is masked from 'package:S4Vectors':

    cor

The following object is masked from 'package:stats':

    cor

dev.new(): using pdf(file="Rplots1.pdf")
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MIKTEX~1.9\miktex\bin\x64\texify.exe" --quiet --pdf "PloGO2_with_WGNCA_vignette.tex" --max-iterations=20 -I "C:/Users/biocbuild/bbs-3.12-bioc/R/share/texmf/tex/latex" -I "C:/Users/biocbuild/bbs-3.12-bioc/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'PloGO2_with_WGNCA_vignette.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'PloGO2_with_WGNCA_vignette.pdf' for vignette with name 'PloGO2_with_WGNCA_vignette' and engine 'utils::Sweave'. The following files exist in working directory 'C:\Users\biocbuild\bbs-3.12-bioc\tmpdir\RtmpWirtvM\Rbuild219c34503d41\PloGO2\vignettes': 'Abundance_barplot.png' (63698 bytes), 'Annotation1Perc.pdf' (4937 bytes), 'Boxplot eigenproteins.png' (97720 bytes), 'Boxplot hub proteins - black.png' (69119 bytes), 'Boxplot hub proteins - blue.png' (68107 bytes), 'Boxplot hub proteins - brown.png' (71622 bytes), 'Boxplot hub proteins - green.png' (67447 bytes), 'Boxplot hub proteins - red.png' (70527 bytes), 'Boxplot hub proteins - turquoise.png' (67027 bytes), 'Boxplot hub proteins - yellow.png' (70074 bytes), 'DendroColorMergedClust.png' (51769 bytes), 'Dendrogram eigenproteins.png' (44311 bytes), 'File1.png' (168118 bytes), 'Heatmap eigenproteins.png' (7592 bytes), 'Module eigenprotein.csv' (2715 bytes), 'Network heatmap.png' (135392 bytes), 'PloGO2Results.xlsx' (283252 bytes), 'PloGO2_vignette.R' (8288 bytes), 'PloGO2_vignette.Rnw' (18631 bytes), 'PloGO2_vignette.aux' (4108 bytes), 'PloGO2_vignette.bbl' (2386 bytes), 'PloGO2_vignette.blg' (233 bytes), 'PloGO2_vignette.log' (23926 bytes), 'PloGO2_vignette.out' (996 bytes), 'PloGO2_vignette.pdf' (466888 bytes), 'PloGO2_vignette.tex' (27417 bytes), 'PloGO2_with_WGNCA_vignette.Rnw' (5271 bytes), 'PloGO2_with_WGNCA_vignette.tex' (6732 bytes), 'REFERENCES.bib' (7988 bytes), 'ResultsWGCNA.xlsx' (208479 bytes), 'Rplots.pdf' (7507 bytes), 'Rplots1.pdf' (0 bytes), 'ScaleFreeTopology.png' (54252 bytes), 'Thumbs.db' (14336 bytes), 'WGCNAClusterPattenAve.png' (144624 bytes), 'WGCNAClusterPattenME.png' (145735 bytes), 'plogo2.png' (125786 bytes)
--- failed re-building 'PloGO2_with_WGNCA_vignette.Rnw'

Warning in file.remove(f) :
  cannot remove file 'PloGO2_with_WGNCA_vignette.tex', reason 'Permission denied'
Warning in file.remove(f) :
  cannot remove file 'Rplots.pdf', reason 'Permission denied'
SUMMARY: processing the following file failed:
  'PloGO2_with_WGNCA_vignette.Rnw'

Error: Vignette re-building failed.
Execution halted
BUILD report for PloGO2 on tokay1

Summary

Command output
