Back to Multiple platform build/check report for BioC 3.12
ABCDEFGHIJKLMNO[P]QRSTUVWXYZ

INSTALL report for PhosR on tokay1

This page was generated on 2021-05-06 12:32:45 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the PhosR package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1342/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PhosR 1.0.0  (landing page)
Taiyun Kim
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/PhosR
Branch: RELEASE_3_12
Last Commit: 39a78ff
Last Changed Date: 2020-10-27 12:01:31 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: PhosR
Version: 1.0.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/PhosR_1.0.0.tar.gz && rm -rf PhosR.buildbin-libdir && mkdir PhosR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PhosR.buildbin-libdir PhosR_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL PhosR_1.0.0.zip && rm PhosR_1.0.0.tar.gz PhosR_1.0.0.zip
StartedAt: 2021-05-05 18:33:03 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 18:33:28 -0400 (Wed, 05 May 2021)
EllapsedTime: 25.0 seconds
RetCode: 0
Status:   OK   

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/PhosR_1.0.0.tar.gz && rm -rf PhosR.buildbin-libdir && mkdir PhosR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PhosR.buildbin-libdir PhosR_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL PhosR_1.0.0.zip && rm PhosR_1.0.0.tar.gz PhosR_1.0.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2118k  100 2118k    0     0  41.4M      0 --:--:-- --:--:-- --:--:-- 42.2M

install for i386

* installing *source* package 'PhosR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'PhosR'
    finding HTML links ... done
    KinaseFamily                            html  
    Pathways.KEGG                           html  
    Pathways.reactome                       html  
    PhosphoSite.human                       html  
    PhosphoSite.mouse                       html  
    PhosphoSite.rat                         html  
    RUVphospho                              html  
    SPSs                                    html  
    Signalomes                              html  
    createFrequencyMat                      html  
    frequencyScoring                        html  
    kinaseSubstrateHeatmap                  html  
    kinaseSubstratePred                     html  
    kinaseSubstrateProfile                  html  
    kinaseSubstrateScore                    html  
    mIntersect                              html  
    matANOVA                                html  
    meanAbundance                           html  
    medianScaling                           html  
    minmax                                  html  
    motif.human.list                        html  
    motif.mouse.list                        html  
    motif.rat.list                          html  
    pathwayOverrepresent                    html  
    pathwayRankBasedEnrichment              html  
    phosCollapse                            html  
    phospho.L6.ratio                        html  
    phospho.cells.Ins                       html  
    phospho.liver.Ins.TC.ratio.RUV          html  
    plotQC                                  html  
    ptImpute                                html  
    scImpute                                html  
    selectGrps                              html  
    selectOverallPercent                    html  
    selectTimes                             html  
    siteAnnotate                            html  
    standardise                             html  
    tImpute                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'PhosR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PhosR' as PhosR_1.0.0.zip
* DONE (PhosR)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'PhosR' successfully unpacked and MD5 sums checked