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CHECK report for OpenStats on merida1

This page was generated on 2021-05-06 12:36:01 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the OpenStats package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1271/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OpenStats 1.2.0  (landing page)
Hamed Haseli Mashhadi
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/OpenStats
Branch: RELEASE_3_12
Last Commit: 284378d
Last Changed Date: 2020-10-27 11:56:15 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: OpenStats
Version: 1.2.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:OpenStats.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings OpenStats_1.2.0.tar.gz
StartedAt: 2021-05-06 04:25:34 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 04:28:16 -0400 (Thu, 06 May 2021)
EllapsedTime: 162.5 seconds
RetCode: 0
Status:   OK  
CheckDir: OpenStats.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:OpenStats.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings OpenStats_1.2.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/OpenStats.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘OpenStats/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘OpenStats’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OpenStats’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

OpenStats.Rcheck/00install.out

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL OpenStats
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘OpenStats’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (OpenStats)

Tests output


Example timings

OpenStats.Rcheck/OpenStats-Ex.timings

nameusersystemelapsed
OpenStatsAnalysis2.7130.0672.789
OpenStatsBuilder000
OpenStatsComplementarySplit2.0700.0212.094
OpenStatsList2.6530.5143.192
OpenStatsReport3.7540.4414.176
plot.OpenStats0.6950.1030.792
plot.OpenStatsComplementarySplit2.7600.3753.118
plot.OpenStatsFE0.1430.0140.157
plot.OpenStatsMM0.9200.1201.034
plot.OpenStatsRR0.4610.0550.515
print.OpenStats0.6230.0960.717
print.OpenStatsComplementarySplit2.6770.3633.026
print.OpenStatsFE0.1140.0130.126
print.OpenStatsMM0.8500.1180.965
print.OpenStatsRR0.4640.0590.522
summary.OpenStats0.5780.0820.659
summary.OpenStatsComplementarySplit2.6410.3512.978
summary.OpenStatsFE0.1230.0120.135
summary.OpenStatsMM0.9640.1211.079
summary.OpenStatsRR0.5060.0590.563