Back to Multiple platform build/check report for BioC 3.12
ABCDEFGHIJKLM[N]OPQRSTUVWXYZ

INSTALL report for NormqPCR on tokay1

This page was generated on 2021-05-06 12:32:33 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the NormqPCR package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1233/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
NormqPCR 1.36.0  (landing page)
James Perkins
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/NormqPCR
Branch: RELEASE_3_12
Last Commit: 3d0cc46
Last Changed Date: 2020-10-27 10:42:19 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  ERROR    ERROR  skippedskipped

Summary

Package: NormqPCR
Version: 1.36.0
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/NormqPCR_1.36.0.tar.gz && rm -rf NormqPCR.buildbin-libdir && mkdir NormqPCR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=NormqPCR.buildbin-libdir NormqPCR_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL NormqPCR_1.36.0.zip && rm NormqPCR_1.36.0.tar.gz NormqPCR_1.36.0.zip
StartedAt: 2021-05-05 17:37:00 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 17:38:18 -0400 (Wed, 05 May 2021)
EllapsedTime: 78.1 seconds
RetCode: 0
Status:   OK   

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/NormqPCR_1.36.0.tar.gz && rm -rf NormqPCR.buildbin-libdir && mkdir NormqPCR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=NormqPCR.buildbin-libdir NormqPCR_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL NormqPCR_1.36.0.zip && rm NormqPCR_1.36.0.tar.gz NormqPCR_1.36.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  310k  100  310k    0     0  11.0M      0 --:--:-- --:--:-- --:--:-- 11.6M

install for i386

* installing *source* package 'NormqPCR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'NormqPCR'
    finding HTML links ... done
    Bladder                                 html  
    BladderRepro                            html  
    Colon                                   html  
    ComputeNRQs                             html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6ZjOOZ/R.INSTALLb5865301ed0/NormqPCR/man/ComputeNRQs.Rd:14: file link 'qPCRBatch' in package 'ReadqPCR' does not exist and so has been treated as a topic
    CqValues                                html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp6ZjOOZ/R.INSTALLb5865301ed0/NormqPCR/man/CqValues.Rd:23: file link 'CyclesSet' in package 'ReadqPCR' does not exist and so has been treated as a topic
    NormqPCR-package                        html  
    combineTechReps                         html  
    combineTechRepsSD                       html  
    deltaCt                                 html  
    deltaDeltaCt                            html  
    geNorm                                  html  
    geomMean                                html  
    makeAllNAs                              html  
    makeAllNewVal                           html  
    replaceAboveCutOff                      html  
    replaceNAs                              html  
    selectHKs                               html  
    stabMeasureM                            html  
    stabMeasureRho                          html  
** building package indices
** installing vignettes
   'NormqPCR.Rnw' 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'NormqPCR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'NormqPCR' as NormqPCR_1.36.0.zip
* DONE (NormqPCR)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'NormqPCR' successfully unpacked and MD5 sums checked