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CHECK report for MBttest on tokay1

This page was generated on 2021-05-06 12:32:09 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the MBttest package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1020/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MBttest 1.18.0  (landing page)
Yuan-De Tan
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/MBttest
Branch: RELEASE_3_12
Last Commit: d9901a4
Last Changed Date: 2020-10-27 11:35:45 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: MBttest
Version: 1.18.0
Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MBttest.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings MBttest_1.18.0.tar.gz
StartedAt: 2021-05-06 04:18:19 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 04:19:18 -0400 (Thu, 06 May 2021)
EllapsedTime: 58.6 seconds
RetCode: 0
Status:   OK   
CheckDir: MBttest.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MBttest.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings MBttest_1.18.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/MBttest.Rcheck'
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MBttest/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MBttest' version '1.18.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MBttest' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

MBttest.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/MBttest_1.18.0.tar.gz && rm -rf MBttest.buildbin-libdir && mkdir MBttest.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MBttest.buildbin-libdir MBttest_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL MBttest_1.18.0.zip && rm MBttest_1.18.0.tar.gz MBttest_1.18.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 3479k  100 3479k    0     0  60.0M      0 --:--:-- --:--:-- --:--:-- 61.7M

install for i386

* installing *source* package 'MBttest' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MBttest'
    finding HTML links ... done
    MBttest-package                         html  
    betaparametVP                           html  
    betaparametab                           html  
    betaparametw                            html  
    betattest                               html  
    dat                                     html  
    jkttcell                                html  
    maplot                                  html  
    mbetattest                              html  
    mtprocedure                             html  
    mtpvadjust                              html  
    myheatmap                               html  
    oddratio                                html  
    pratio                                  html  
    simulat                                 html  
    skjt                                    html  
    smbetattest                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MBttest' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MBttest' as MBttest_1.18.0.zip
* DONE (MBttest)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'MBttest' successfully unpacked and MD5 sums checked

Tests output


Example timings

MBttest.Rcheck/examples_i386/MBttest-Ex.timings

nameusersystemelapsed
MBttest-package0.420.040.47
betaparametVP0.110.020.13
betaparametab000
betaparametw000
betattest0.400.010.46
dat0.080.000.08
jkttcell0.030.020.04
maplot0.750.020.77
mbetattest1.130.001.12
mtprocedure000
mtpvadjust0.020.000.01
myheatmap3.590.093.69
oddratio000
pratio000
simulat0.190.020.20
skjt0.060.000.07
smbetattest0.410.010.42

MBttest.Rcheck/examples_x64/MBttest-Ex.timings

nameusersystemelapsed
MBttest-package0.470.010.49
betaparametVP0.120.000.12
betaparametab000
betaparametw000
betattest0.420.030.45
dat0.050.020.07
jkttcell0.030.000.03
maplot0.390.000.39
mbetattest1.200.011.22
mtprocedure0.020.000.02
mtpvadjust000
myheatmap3.570.053.62
oddratio000
pratio000
simulat0.190.000.19
skjt0.050.000.05
smbetattest0.390.000.39