Tallulah Andrews
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/M3Drop |
| Branch: RELEASE_3_12 |
| Last Commit: 17f0450 |
| Last Changed Date: 2020-10-27 11:19:00 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:32:04 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the M3Drop package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 981/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| M3Drop 1.16.0 (landing page) Tallulah Andrews
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: M3Drop |
| Version: 1.16.0 |
| Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:M3Drop.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings M3Drop_1.16.0.tar.gz |
| StartedAt: 2021-05-06 04:10:57 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 04:25:12 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 854.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: M3Drop.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:M3Drop.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings M3Drop_1.16.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/M3Drop.Rcheck'
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'M3Drop/DESCRIPTION' ... OK
* this is package 'M3Drop' version '1.16.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'M3Drop' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'numDeriv'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Missing or unexported object: 'scater::exprs'
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
M3DropConvertData: no visible global function definition for 'assays'
NBumiConvertData: no visible global function definition for 'assays'
bg__filter_cells: no visible binding for global variable 'x'
bg__get_extreme_residuals: no visible binding for global variable 'x'
Undefined global functions or variables:
assays x
* checking Rd files ... NOTE
prepare_Rd: NBumi_FSOther.Rd:8-10: Dropping empty section \usage
prepare_Rd: NBumi_TradDE.Rd:7-8: Dropping empty section \usage
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
NewSimulations 171.50 2.75 174.31
Imputation 114.16 0.07 114.25
M3D_getmarkers 41.25 0.60 41.85
M3D_ConverData 7.45 0.46 7.90
Brennecke_getVariableGenes 5.06 0.16 5.22
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
NewSimulations 147.66 0.93 148.58
Imputation 111.72 0.03 111.76
M3D_getmarkers 43.83 0.05 43.99
M3D_ConverData 8.88 0.27 9.14
Brennecke_getVariableGenes 6.22 0.16 6.38
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'C:/Users/biocbuild/bbs-3.12-bioc/meat/M3Drop.Rcheck/00check.log'
for details.
M3Drop.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/M3Drop_1.16.0.tar.gz && rm -rf M3Drop.buildbin-libdir && mkdir M3Drop.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=M3Drop.buildbin-libdir M3Drop_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL M3Drop_1.16.0.zip && rm M3Drop_1.16.0.tar.gz M3Drop_1.16.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 56165 100 56165 0 0 2480k 0 --:--:-- --:--:-- --:--:-- 2611k
install for i386
* installing *source* package 'M3Drop' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'M3Drop'
finding HTML links ... done
Brennecke_getVariableGenes html
Consensus_FS html
Fitting_Dropout_Models html
Imputation html
M3D_Clean_Data html
M3D_ConverData html
M3D_Differential_Expression html
M3D_Dropout_Models html
M3D_Expression_Heatmap html
M3D_Get_Extremes html
M3D_Get_Heatmap_Cell_Clusters html
M3D_Plotting html
M3D_Simulations html
M3D_Test_Shift html
M3D_ThreeSet_Venn html
M3D_TraditionalDE html
M3D_calc_var html
M3D_getmarkers html
M3D_horz_res html
NBumi_CheckFit html
NBumi_CoExpression html
NBumi_CompareModels html
NBumi_ConvertToInteger html
NBumi_ConvrtData html
NBumi_FSDrop html
NBumi_FSHighVar html
NBumi_FSOther html
NBumi_FitDisp html
NBumi_FitDispVsMean html
NBumi_FitModel html
NBumi_HVG html
NBumi_TradDE html
NewSimulations html
Other_FS html
PoissonUMIFeatureSelectionDropouts html
bg__fit_gamma html
bg__get_stats html
bg__mean2disp html
bg__shift_size html
bg__var_vs_drop html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'M3Drop' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'M3Drop' as M3Drop_1.16.0.zip
* DONE (M3Drop)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'M3Drop' successfully unpacked and MD5 sums checked
|
M3Drop.Rcheck/examples_i386/M3Drop-Ex.timings
|
M3Drop.Rcheck/examples_x64/M3Drop-Ex.timings
|