David Coffey
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/LymphoSeq |
| Branch: RELEASE_3_12 |
| Last Commit: 294dfbb |
| Last Changed Date: 2020-10-27 11:14:07 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:32:03 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the LymphoSeq package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 979/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| LymphoSeq 1.18.0 (landing page) David Coffey
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: LymphoSeq |
| Version: 1.18.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/LymphoSeq_1.18.0.tar.gz && rm -rf LymphoSeq.buildbin-libdir && mkdir LymphoSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LymphoSeq.buildbin-libdir LymphoSeq_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL LymphoSeq_1.18.0.zip && rm LymphoSeq_1.18.0.tar.gz LymphoSeq_1.18.0.zip |
| StartedAt: 2021-05-05 18:39:14 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 18:40:36 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 81.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/LymphoSeq_1.18.0.tar.gz && rm -rf LymphoSeq.buildbin-libdir && mkdir LymphoSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LymphoSeq.buildbin-libdir LymphoSeq_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL LymphoSeq_1.18.0.zip && rm LymphoSeq_1.18.0.tar.gz LymphoSeq_1.18.0.zip
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install for i386
* installing *source* package 'LymphoSeq' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'LymphoSeq'
finding HTML links ... done
alignSeq html
bhattacharyyaCoefficient html
bhattacharyyaMatrix html
chordDiagramVDJ html
clonalRelatedness html
clonality html
cloneTrack html
commonSeqs html
commonSeqsBar html
commonSeqsPlot html
commonSeqsVenn html
differentialAbundance html
exportFasta html
geneFreq html
lorenzCurve html
mergeFiles html
pairwisePlot html
phyloTree html
productive html
productiveSeq html
readImmunoSeq html
removeSeq html
searchPublished html
searchSeq html
seqMatrix html
similarityMatrix html
similarityScore html
topFreq html
topSeqs html
topSeqsPlot html
uniqueSeqs html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'LymphoSeq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'LymphoSeq' as LymphoSeq_1.18.0.zip
* DONE (LymphoSeq)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'LymphoSeq' successfully unpacked and MD5 sums checked