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### Running command:
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###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:KEGGREST.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings KEGGREST_1.30.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.12-bioc/meat/KEGGREST.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGREST/DESCRIPTION’ ... OK
* this is package ‘KEGGREST’ version ‘1.30.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGREST’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
keggList      0.480  0.024  13.285
keggLink      0.476  0.024   6.196
listDatabases 0.420  0.024   9.009
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘KEGGREST_unit_tests.R’
 ERROR
Running the tests in ‘tests/KEGGREST_unit_tests.R’ failed.
Last 13 lines of output:
  KEGGREST RUnit Tests - 11 test functions, 1 error, 1 failure
  FAILURE in test_keggGet_2: Error in checkTrue(class(res) == "character") : Test not TRUE
  
  ERROR in test_listDatabases: Error in .getUrl(url, .textParser) : Bad Request (HTTP 400).
  
  Test files with failing tests
  
     test_KEGGREST.R 
       test_keggGet_2 
       test_listDatabases 
  
  
  Error in BiocGenerics:::testPackage("KEGGREST") : 
    unit tests failed for package KEGGREST
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.12-bioc/meat/KEGGREST.Rcheck/00check.log’
for details.

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### Running command:
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###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL KEGGREST
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* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘KEGGREST’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (KEGGREST)

R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("KEGGREST")
Timing stopped at: 0.136 0 0.972
Error in checkTrue(class(res) == "character") : Test not TRUE

Timing stopped at: 0.196 0 9.219
Error in .getUrl(url, .textParser) : Bad Request (HTTP 400).
No encoding supplied: defaulting to UTF-8.


RUNIT TEST PROTOCOL -- Thu May  6 02:55:20 2021 
*********************************************** 
Number of test functions: 11 
Number of errors: 1 
Number of failures: 1 

 
1 Test Suite : 
KEGGREST RUnit Tests - 11 test functions, 1 error, 1 failure
FAILURE in test_keggGet_2: Error in checkTrue(class(res) == "character") : Test not TRUE

ERROR in test_listDatabases: Error in .getUrl(url, .textParser) : Bad Request (HTTP 400).

Test files with failing tests

   test_KEGGREST.R 
     test_keggGet_2 
     test_listDatabases 


Error in BiocGenerics:::testPackage("KEGGREST") : 
  unit tests failed for package KEGGREST
Execution halted