Back to Multiple platform build/check report for BioC 3.12
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

BUILD BIN report for GenomeInfoDb on tokay1

This page was generated on 2021-05-06 12:31:27 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the GenomeInfoDb package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 711/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenomeInfoDb 1.26.7  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/GenomeInfoDb
Branch: RELEASE_3_12
Last Commit: 6bef593
Last Changed Date: 2021-04-08 04:38:43 -0400 (Thu, 08 Apr 2021)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: GenomeInfoDb
Version: 1.26.7
Command: rm -rf GenomeInfoDb.buildbin-libdir && mkdir GenomeInfoDb.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomeInfoDb.buildbin-libdir GenomeInfoDb_1.26.7.tar.gz
StartedAt: 2021-05-06 09:10:13 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 09:10:40 -0400 (Thu, 06 May 2021)
EllapsedTime: 27.3 seconds
RetCode: 0
Status:   OK   
PackageFile: GenomeInfoDb_1.26.7.zip
PackageFileSize: 3.938 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf GenomeInfoDb.buildbin-libdir && mkdir GenomeInfoDb.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomeInfoDb.buildbin-libdir GenomeInfoDb_1.26.7.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'GenomeInfoDb' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GenomeInfoDb'
    finding HTML links ... done
    GenomeDescription-class                 html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/GenomeDescription-class.Rd:44: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/GenomeDescription-class.Rd:85: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/GenomeDescription-class.Rd:94: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/GenomeDescription-class.Rd:133: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
    GenomeInfoDb-internals                  html  
    Seqinfo-class                           html  
    fetchExtendedChromInfoFromUCSC          html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/fetchExtendedChromInfoFromUCSC.Rd:145: file link 'getBSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
    getChromInfoFromEnsembl                 html  
    getChromInfoFromNCBI                    html  
    getChromInfoFromUCSC                    html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/getChromInfoFromUCSC.Rd:170: file link 'getBSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/getChromInfoFromUCSC.Rd:171: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
    loadTaxonomyDb                          html  
    mapGenomeBuilds                         html  
    rankSeqlevels                           html  
    seqinfo                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/seqinfo.Rd:82: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/seqinfo.Rd:105: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/seqinfo.Rd:106: file link 'GAlignmentPairs' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/seqinfo.Rd:107: file link 'GAlignmentsList' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/seqinfo.Rd:116: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/seqinfo.Rd:118: file link 'exonsBy' in package 'GenomicFeatures' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/seqinfo.Rd:131: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/seqinfo.Rd:136: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/seqinfo.Rd:137: file link 'GAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/seqinfo.Rd:182: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/seqinfo.Rd:182: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/seqinfo.Rd:184: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/seqinfo.Rd:186: file link 'GAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/seqinfo.Rd:187: file link 'GAlignmentPairs' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/seqinfo.Rd:188: file link 'GAlignmentsList' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/seqinfo.Rd:190: file link 'TxDb' in package 'GenomicFeatures' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/seqinfo.Rd:192: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/seqinfo.Rd:226: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/seqinfo.Rd:226: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/seqinfo.Rd:229: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/seqinfo.Rd:232: file link 'GAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/seqinfo.Rd:233: file link 'GAlignmentPairs' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/seqinfo.Rd:234: file link 'GAlignmentsList' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/seqinfo.Rd:237: file link 'TxDb' in package 'GenomicFeatures' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpo9pvYQ/R.INSTALL4008252b56ef/GenomeInfoDb/man/seqinfo.Rd:240: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
    seqlevels-wrappers                      html  
    seqlevelsStyle                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GenomeInfoDb' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomeInfoDb' as GenomeInfoDb_1.26.7.zip
* DONE (GenomeInfoDb)