Back to Multiple platform build/check report for BioC 3.12
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

BUILD BIN report for GOsummaries on tokay1

This page was generated on 2021-05-06 12:31:32 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the GOsummaries package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 768/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GOsummaries 2.26.0  (landing page)
Raivo Kolde
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/GOsummaries
Branch: RELEASE_3_12
Last Commit: f9d57af
Last Changed Date: 2020-10-27 10:58:48 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: GOsummaries
Version: 2.26.0
Command: rm -rf GOsummaries.buildbin-libdir && mkdir GOsummaries.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOsummaries.buildbin-libdir GOsummaries_2.26.0.tar.gz
StartedAt: 2021-05-06 09:13:27 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 09:13:56 -0400 (Thu, 06 May 2021)
EllapsedTime: 28.8 seconds
RetCode: 0
Status:   OK   
PackageFile: GOsummaries_2.26.0.zip
PackageFileSize: 3.133 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf GOsummaries.buildbin-libdir && mkdir GOsummaries.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOsummaries.buildbin-libdir GOsummaries_2.26.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'GOsummaries' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c findCoordinates.cpp -o findCoordinates.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o GOsummaries.dll tmp.def findCoordinates.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/GOsummaries.buildbin-libdir/00LOCK-GOsummaries/00new/GOsummaries/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GOsummaries'
    finding HTML links ... done
    GOsummaries-package                     html  
    add_expression.gosummaries              html  
    add_to_slot.gosummaries                 html  
    customize                               html  
    gosummaries.MArrayLM                    html  
    finding level-2 HTML links ... done

    gosummaries                             html  
    gosummaries.kmeans                      html  
    gosummaries.matrix                      html  
    gosummaries.prcomp                      html  
    metabolomic_example                     html  
    metagenomic_example                     html  
    panel_boxplot                           html  
    plot.gosummaries                        html  
    plotWordcloud                           html  
    tissue_example                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GOsummaries' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c findCoordinates.cpp -o findCoordinates.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o GOsummaries.dll tmp.def findCoordinates.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/GOsummaries.buildbin-libdir/GOsummaries/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GOsummaries' as GOsummaries_2.26.0.zip
* DONE (GOsummaries)