Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:31:31 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the GOexpress package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 758/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
GOexpress 1.24.0 (landing page) Kevin Rue-Albrecht
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: GOexpress |
Version: 1.24.0 |
Command: rm -rf GOexpress.buildbin-libdir && mkdir GOexpress.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOexpress.buildbin-libdir GOexpress_1.24.0.tar.gz |
StartedAt: 2021-05-06 09:12:55 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 09:13:34 -0400 (Thu, 06 May 2021) |
EllapsedTime: 39.0 seconds |
RetCode: 0 |
Status: OK |
PackageFile: GOexpress_1.24.0.zip |
PackageFileSize: 3.062 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf GOexpress.buildbin-libdir && mkdir GOexpress.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOexpress.buildbin-libdir GOexpress_1.24.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'GOexpress' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'GOexpress' finding HTML links ... done AlvMac html AlvMac_GOgenes html AlvMac_allGO html AlvMac_allgenes html AlvMac_results html AlvMac_results.pVal html GO_analyse html GOexpress-package html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpw7lul6/R.INSTALL22dc77f067de/GOexpress/man/GOexpress-package.Rd:100: file link 'Biobase' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpw7lul6/R.INSTALL22dc77f067de/GOexpress/man/GOexpress-package.Rd:102: file link 'RColorBrewer' in package 'RColorBrewer' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpw7lul6/R.INSTALL22dc77f067de/GOexpress/man/GOexpress-package.Rd:103: file link 'VennDiagram' in package 'VennDiagram' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpw7lul6/R.INSTALL22dc77f067de/GOexpress/man/GOexpress-package.Rd:109: file link 'bluered' in package 'gplots' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpw7lul6/R.INSTALL22dc77f067de/GOexpress/man/GOexpress-package.Rd:110: file link 'greenred' in package 'gplots' does not exist and so has been treated as a topic cluster_GO html expression_plot html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpw7lul6/R.INSTALL22dc77f067de/GOexpress/man/expression_plot.Rd:140: file link 'Biobase' in package 'Biobase' does not exist and so has been treated as a topic expression_plot_symbol html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpw7lul6/R.INSTALL22dc77f067de/GOexpress/man/expression_plot_symbol.Rd:152: file link 'Biobase' in package 'Biobase' does not exist and so has been treated as a topic expression_profiles html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpw7lul6/R.INSTALL22dc77f067de/GOexpress/man/expression_profiles.Rd:154: file link 'Biobase' in package 'Biobase' does not exist and so has been treated as a topic expression_profiles_symbol html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpw7lul6/R.INSTALL22dc77f067de/GOexpress/man/expression_profiles_symbol.Rd:161: file link 'Biobase' in package 'Biobase' does not exist and so has been treated as a topic heatmap_GO html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpw7lul6/R.INSTALL22dc77f067de/GOexpress/man/heatmap_GO.Rd:139: file link 'brewer.pal.info' in package 'RColorBrewer' does not exist and so has been treated as a topic hist_scores html list_genes html microarray2dataset html pValue_GO html plot_design html prefix2dataset html quantiles_scores html rerank html subEset html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpw7lul6/R.INSTALL22dc77f067de/GOexpress/man/subEset.Rd:46: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic subset_scores html table_genes html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'GOexpress' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'GOexpress' as GOexpress_1.24.0.zip * DONE (GOexpress)