Shijia Zhu
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/GIGSEA |
| Branch: RELEASE_3_12 |
| Last Commit: 3a7ac0b |
| Last Changed Date: 2020-10-27 11:36:03 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:31:30 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the GIGSEA package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 742/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GIGSEA 1.8.0 (landing page) Shijia Zhu
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: GIGSEA |
| Version: 1.8.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/GIGSEA_1.8.0.tar.gz && rm -rf GIGSEA.buildbin-libdir && mkdir GIGSEA.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GIGSEA.buildbin-libdir GIGSEA_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL GIGSEA_1.8.0.zip && rm GIGSEA_1.8.0.tar.gz GIGSEA_1.8.0.zip |
| StartedAt: 2021-05-05 16:45:39 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 16:46:41 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 62.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/GIGSEA_1.8.0.tar.gz && rm -rf GIGSEA.buildbin-libdir && mkdir GIGSEA.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GIGSEA.buildbin-libdir GIGSEA_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL GIGSEA_1.8.0.zip && rm GIGSEA_1.8.0.tar.gz GIGSEA_1.8.0.zip
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install for i386
* installing *source* package 'GIGSEA' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GIGSEA'
finding HTML links ... done
MSigDB.KEGG.Pathway html
MSigDB.TF html
MSigDB.miRNA html
TargetScan.miRNA html
dataFrame2geneSet html
geneSet2Net html
geneSet2sparseMatrix html
gmt2geneSet html
heart.metaXcan html
matrixPval html
orderedIntersect html
permutationMultipleLm html
permutationMultipleLmMatrix html
permutationSimpleLm html
permutationSimpleLmMatrix html
runGIGSEA html
weightedGSEA html
weightedMultipleLm html
weightedPearsonCorr html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'GIGSEA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GIGSEA' as GIGSEA_1.8.0.zip
* DONE (GIGSEA)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'GIGSEA' successfully unpacked and MD5 sums checked