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INSTALL report for FRASER on tokay1

This page was generated on 2021-05-06 12:31:22 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the FRASER package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 647/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FRASER 1.2.1  (landing page)
Christian Mertes
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/FRASER
Branch: RELEASE_3_12
Last Commit: 9160638
Last Changed Date: 2021-01-31 17:38:49 -0400 (Sun, 31 Jan 2021)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: FRASER
Version: 1.2.1
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/FRASER_1.2.1.tar.gz && rm -rf FRASER.buildbin-libdir && mkdir FRASER.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FRASER.buildbin-libdir FRASER_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL FRASER_1.2.1.zip && rm FRASER_1.2.1.tar.gz FRASER_1.2.1.zip
StartedAt: 2021-05-05 18:46:28 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 18:50:12 -0400 (Wed, 05 May 2021)
EllapsedTime: 223.8 seconds
RetCode: 0
Status:   OK   

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/FRASER_1.2.1.tar.gz && rm -rf FRASER.buildbin-libdir && mkdir FRASER.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FRASER.buildbin-libdir FRASER_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL FRASER_1.2.1.zip && rm FRASER_1.2.1.tar.gz FRASER_1.2.1.zip
###
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100  953k  100  953k    0     0  27.7M      0 --:--:-- --:--:-- --:--:-- 29.0M

install for i386

* installing *source* package 'FRASER' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"  -fopenmp -DARMA_DONT_USE_OPENMP   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"  -fopenmp -DARMA_DONT_USE_OPENMP   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c loss_n_gradient_functions.cpp -o loss_n_gradient_functions.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o FRASER.dll tmp.def RcppExports.o loss_n_gradient_functions.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/FRASER.buildbin-libdir/00LOCK-FRASER/00new/FRASER/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'FRASER'
    finding HTML links ... done
    FRASER                                  html  
    FraserDataSet-class                     html  
    FraserDataSet                           html  
    annotateRanges                          html  
    assayNames-FraserDataSet-method         html  
    assays-FraserDataSet-method             html  
    calculatePSIValues                      html  
    countRNA                                html  
    counts                                  html  
    createTestFraserDataSet                 html  
    fds-methods                             html  
    filtering                               html  
    fit                                     html  
    getter_setter_functions                 html  
    injectOutliers                          html  
    length-FraserDataSet-method             html  
    loadFraserDataSet                       html  
    makeSimulatedFraserDataSet              html  
    mergeExternalData                       html  
    optimHyperParams                        html  
    plotFunctions                           html  
    finding level-2 HTML links ... done

    psiTypes                                html  
    results                                 html  
    subset                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'FRASER' ...
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"  -fopenmp -DARMA_DONT_USE_OPENMP   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"  -fopenmp -DARMA_DONT_USE_OPENMP   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c loss_n_gradient_functions.cpp -o loss_n_gradient_functions.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o FRASER.dll tmp.def RcppExports.o loss_n_gradient_functions.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/FRASER.buildbin-libdir/FRASER/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'FRASER' as FRASER_1.2.1.zip
* DONE (FRASER)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'FRASER' successfully unpacked and MD5 sums checked