Back to Multiple platform build/check report for BioC 3.12
ABCD[E]FGHIJKLMNOPQRSTUVWXYZ

INSTALL report for EDDA on merida1

This page was generated on 2021-05-06 12:34:52 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the EDDA package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 531/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EDDA 1.28.0  (landing page)
Chia Kuan Hui Burton , Niranjan Nagarajan
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/EDDA
Branch: RELEASE_3_12
Last Commit: 8f36bfe
Last Changed Date: 2020-10-27 10:54:58 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository

Summary

Package: EDDA
Version: 1.28.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL EDDA
StartedAt: 2021-05-05 17:23:31 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 17:24:18 -0400 (Wed, 05 May 2021)
EllapsedTime: 47.0 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL EDDA
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘EDDA’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c cuffdiff.cpp -o cuffdiff.o
In file included from cuffdiff.cpp:1:
In file included from ./cuffdiff.h:4:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp.h:57:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp/DataFrame.h:136:18: warning: unused variable 'data' [-Wunused-variable]
            SEXP data = Parent::get__();
                 ^
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o EDDA.so cuffdiff.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-EDDA/00new/EDDA/libs
** R
** data
** byte-compile and prepare package for lazy loading
Warning message:
Package 'DESeq' is deprecated and will be removed from Bioconductor
  version 3.13. Please use DESeq2 
No methods found in package ‘baySeq’ for request: ‘rbind’ when loading ‘EDDA’
Note: possible error in 'exactTestByDeviance(y1, ': unused argument (big.count = big.count) 
Note: possible error in 'exactTestBySmallP(y1, ': unused argument (big.count = big.count) 
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
  version 3.13. Please use DESeq2
No methods found in package ‘baySeq’ for request: ‘rbind’ when loading ‘EDDA’
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
  version 3.13. Please use DESeq2
No methods found in package ‘baySeq’ for request: ‘rbind’ when loading ‘EDDA’
** testing if installed package keeps a record of temporary installation path
* DONE (EDDA)