Yuting Dai
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/CytoTree |
| Branch: RELEASE_3_12 |
| Last Commit: 929282c |
| Last Changed Date: 2020-11-08 07:16:03 -0400 (Sun, 08 Nov 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:30:35 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the CytoTree package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 419/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CytoTree 1.0.3 (landing page) Yuting Dai
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: CytoTree |
| Version: 1.0.3 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/CytoTree_1.0.3.tar.gz && rm -rf CytoTree.buildbin-libdir && mkdir CytoTree.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CytoTree.buildbin-libdir CytoTree_1.0.3.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL CytoTree_1.0.3.zip && rm CytoTree_1.0.3.tar.gz CytoTree_1.0.3.zip |
| StartedAt: 2021-05-05 19:22:35 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 19:23:58 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 82.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/CytoTree_1.0.3.tar.gz && rm -rf CytoTree.buildbin-libdir && mkdir CytoTree.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CytoTree.buildbin-libdir CytoTree_1.0.3.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL CytoTree_1.0.3.zip && rm CytoTree_1.0.3.tar.gz CytoTree_1.0.3.zip
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install for i386
* installing *source* package 'CytoTree' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c jaccard_coeff.cpp -o jaccard_coeff.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o CytoTree.dll tmp.def RcppExports.o jaccard_coeff.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/CytoTree.buildbin-libdir/00LOCK-CytoTree/00new/CytoTree/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'flowCore' for requests: 'action', 'assign', 'Data', 'gate', 'tree' when loading 'flowUtils'
** help
*** installing help indices
converting help for package 'CytoTree'
finding HTML links ... done
CYT-class html
CytoTree-package html
Rphenograph html
addMetaData html
buildTree html
changeMarker html
constraintMatrix html
correctBatchCYT html
createCYT html
defLeafCells html
defRootCells html
fetchCell html
fetchClustMeta html
fetchPlotMeta html
find_neighbors html
gatingMatrix html
plot2D html
plot3D html
plotBranchHeatmap html
plotCluster html
plotClusterHeatmap html
plotHeatmap html
plotMarkerDensity html
plotPieCluster html
plotPieTree html
plotPseudotimeDensity html
plotPseudotimeTraj html
plotTrajHeatmap html
plotTree html
plotViolin html
processingCluster html
runClara html
runCluster html
runDiff html
runDiffusionMap html
runExprsExtract html
runExprsMerge html
runFastPCA html
runHclust html
runKNN html
runKmeans html
runMclust html
runPhenograph html
runPseudotime html
runSOM html
finding level-2 HTML links ... done
runTSNE html
runUMAP html
runWalk html
show-CYT-method html
subsetCYT html
updateClustMeta html
updatePlotMeta html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'flowCore' for requests: 'action', 'assign', 'Data', 'gate', 'tree' when loading 'flowUtils'
** testing if installed package can be loaded from final location
No methods found in package 'flowCore' for requests: 'action', 'assign', 'Data', 'gate', 'tree' when loading 'flowUtils'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'CytoTree' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c jaccard_coeff.cpp -o jaccard_coeff.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o CytoTree.dll tmp.def RcppExports.o jaccard_coeff.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/CytoTree.buildbin-libdir/CytoTree/libs/x64
** testing if installed package can be loaded
No methods found in package 'flowCore' for requests: 'action', 'assign', 'Data', 'gate', 'tree' when loading 'flowUtils'
* MD5 sums
packaged installation of 'CytoTree' as CytoTree_1.0.3.zip
* DONE (CytoTree)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'CytoTree' successfully unpacked and MD5 sums checked