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BUILD BIN report for AGDEX on tokay1

This page was generated on 2020-08-06 11:53:58 -0400 (Thu, 06 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE AGDEX PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 36/1882HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AGDEX 1.37.0
Cuilan lani Gao
Snapshot Date: 2020-08-05 14:50:59 -0400 (Wed, 05 Aug 2020)
URL: https://git.bioconductor.org/packages/AGDEX
Branch: master
Last Commit: b3b3d17
Last Changed Date: 2020-04-27 14:27:03 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: AGDEX
Version: 1.37.0
Command: rm -rf AGDEX.buildbin-libdir && mkdir AGDEX.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AGDEX.buildbin-libdir AGDEX_1.37.0.tar.gz
StartedAt: 2020-08-06 07:24:48 -0400 (Thu, 06 Aug 2020)
EndedAt: 2020-08-06 07:25:27 -0400 (Thu, 06 Aug 2020)
EllapsedTime: 38.7 seconds
RetCode: 0
Status:  OK  
PackageFile: AGDEX_1.37.0.zip
PackageFileSize: 630.1 KiB

Command output

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### Running command:
###
###   rm -rf AGDEX.buildbin-libdir && mkdir AGDEX.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AGDEX.buildbin-libdir AGDEX_1.37.0.tar.gz
###
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install for i386

* installing *source* package 'AGDEX' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'AGDEX'
    finding HTML links ... done
    AGDEX-package                           html  
    agdex                                   html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0krF7m/R.INSTALL1b1c126e5791/AGDEX/man/agdex.Rd:91: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0krF7m/R.INSTALL1b1c126e5791/AGDEX/man/agdex.Rd:93: file link 'GeneSetCollection' in package 'GSEABase' does not exist and so has been treated as a topic
    agdex.res                               html  
    agdex.scatterplot                       html  
    get.gset.result.details                 html  
    gset.data                               html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0krF7m/R.INSTALL1b1c126e5791/AGDEX/man/gset.data.Rd:24: file link 'GeneSetCollection' in package 'GSEABase' does not exist and so has been treated as a topic
    human.data                              html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0krF7m/R.INSTALL1b1c126e5791/AGDEX/man/human.data.Rd:35: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
    make.dex.set.object                     html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0krF7m/R.INSTALL1b1c126e5791/AGDEX/man/make.dex.set.object.Rd:37: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0krF7m/R.INSTALL1b1c126e5791/AGDEX/man/make.dex.set.object.Rd:39: file link 'GeneSetCollection' in package 'GSEABase' does not exist and so has been treated as a topic
    map.data                                html  
    mouse.data                              html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp0krF7m/R.INSTALL1b1c126e5791/AGDEX/man/mouse.data.Rd:35: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
    read.agdex.gset.details                 html  
    read.agdex.result                       html  
    write.agdex.gset.details                html  
    write.agdex.result                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'AGDEX' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AGDEX' as AGDEX_1.37.0.zip
* DONE (AGDEX)