Back to Multiple platform build/check report for BioC 3.11
ABCDEFGHIJKLMNOPQRS[T]UVWXYZ

INSTALL report for tidybulk on malbec2

This page was generated on 2020-10-17 11:55:55 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE tidybulk PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1797/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tidybulk 1.0.2
Stefano Mangiola
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/tidybulk
Branch: RELEASE_3_11
Last Commit: bfa4dd1
Last Changed Date: 2020-06-08 00:40:18 -0400 (Mon, 08 Jun 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64 [ OK ] OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  NA 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: tidybulk
Version: 1.0.2
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL tidybulk
StartedAt: 2020-10-16 16:12:53 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 16:13:16 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 23.1 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL tidybulk
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’
* installing *source* package ‘tidybulk’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
in method for ‘tidybulk’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘tidybulk’ with signature ‘"RangedSummarizedExperiment"’: no definition for class “RangedSummarizedExperiment”
in method for ‘scale_abundance’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘scale_abundance’ with signature ‘"RangedSummarizedExperiment"’: no definition for class “RangedSummarizedExperiment”
in method for ‘cluster_elements’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘cluster_elements’ with signature ‘"RangedSummarizedExperiment"’: no definition for class “RangedSummarizedExperiment”
in method for ‘reduce_dimensions’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘reduce_dimensions’ with signature ‘"RangedSummarizedExperiment"’: no definition for class “RangedSummarizedExperiment”
in method for ‘rotate_dimensions’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘rotate_dimensions’ with signature ‘"RangedSummarizedExperiment"’: no definition for class “RangedSummarizedExperiment”
in method for ‘remove_redundancy’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘remove_redundancy’ with signature ‘"RangedSummarizedExperiment"’: no definition for class “RangedSummarizedExperiment”
in method for ‘adjust_abundance’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘adjust_abundance’ with signature ‘"RangedSummarizedExperiment"’: no definition for class “RangedSummarizedExperiment”
in method for ‘aggregate_duplicates’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘aggregate_duplicates’ with signature ‘"RangedSummarizedExperiment"’: no definition for class “RangedSummarizedExperiment”
in method for ‘deconvolve_cellularity’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘deconvolve_cellularity’ with signature ‘"RangedSummarizedExperiment"’: no definition for class “RangedSummarizedExperiment”
in method for ‘test_differential_abundance’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘test_differential_abundance’ with signature ‘"RangedSummarizedExperiment"’: no definition for class “RangedSummarizedExperiment”
in method for ‘keep_variable’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘keep_variable’ with signature ‘"RangedSummarizedExperiment"’: no definition for class “RangedSummarizedExperiment”
in method for ‘keep_abundant’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘keep_abundant’ with signature ‘"RangedSummarizedExperiment"’: no definition for class “RangedSummarizedExperiment”
in method for ‘impute_abundance’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘impute_abundance’ with signature ‘"RangedSummarizedExperiment"’: no definition for class “RangedSummarizedExperiment”
Note: wrong number of arguments to '!' 
Note: wrong number of arguments to '>' 
Note: wrong number of arguments to '>' 
Note: wrong number of arguments to '<' 
Note: wrong number of arguments to '>' 
Note: wrong number of arguments to '!' 
Note: wrong number of arguments to '<' 
Note: wrong number of arguments to '>' 
Note: wrong number of arguments to '<' 
Note: wrong number of arguments to '<' 
Note: wrong number of arguments to '!' 
Note: wrong number of arguments to '!' 
Note: wrong number of arguments to '^' 
Note: wrong number of arguments to '/' 
Note: wrong number of arguments to 'floor' 
Note: wrong number of arguments to '>' 
Note: wrong number of arguments to '<' 
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tidybulk)