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INSTALL report for tidybulk on machv2

This page was generated on 2020-10-17 11:59:47 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE tidybulk PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1797/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tidybulk 1.0.2
Stefano Mangiola
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/tidybulk
Branch: RELEASE_3_11
Last Commit: bfa4dd1
Last Changed Date: 2020-06-08 00:40:18 -0400 (Mon, 08 Jun 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  NA 
machv2 macOS 10.14.6 Mojave / x86_64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: tidybulk
Version: 1.0.2
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL tidybulk
StartedAt: 2020-10-16 16:20:11 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 16:20:54 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 42.7 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL tidybulk
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘tidybulk’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
in method for ‘tidybulk’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘tidybulk’ with signature ‘"RangedSummarizedExperiment"’: no definition for class “RangedSummarizedExperiment”
in method for ‘scale_abundance’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘scale_abundance’ with signature ‘"RangedSummarizedExperiment"’: no definition for class “RangedSummarizedExperiment”
in method for ‘cluster_elements’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘cluster_elements’ with signature ‘"RangedSummarizedExperiment"’: no definition for class “RangedSummarizedExperiment”
in method for ‘reduce_dimensions’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘reduce_dimensions’ with signature ‘"RangedSummarizedExperiment"’: no definition for class “RangedSummarizedExperiment”
in method for ‘rotate_dimensions’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘rotate_dimensions’ with signature ‘"RangedSummarizedExperiment"’: no definition for class “RangedSummarizedExperiment”
in method for ‘remove_redundancy’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘remove_redundancy’ with signature ‘"RangedSummarizedExperiment"’: no definition for class “RangedSummarizedExperiment”
in method for ‘adjust_abundance’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘adjust_abundance’ with signature ‘"RangedSummarizedExperiment"’: no definition for class “RangedSummarizedExperiment”
in method for ‘aggregate_duplicates’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘aggregate_duplicates’ with signature ‘"RangedSummarizedExperiment"’: no definition for class “RangedSummarizedExperiment”
in method for ‘deconvolve_cellularity’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘deconvolve_cellularity’ with signature ‘"RangedSummarizedExperiment"’: no definition for class “RangedSummarizedExperiment”
in method for ‘test_differential_abundance’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘test_differential_abundance’ with signature ‘"RangedSummarizedExperiment"’: no definition for class “RangedSummarizedExperiment”
in method for ‘keep_variable’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘keep_variable’ with signature ‘"RangedSummarizedExperiment"’: no definition for class “RangedSummarizedExperiment”
in method for ‘keep_abundant’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘keep_abundant’ with signature ‘"RangedSummarizedExperiment"’: no definition for class “RangedSummarizedExperiment”
in method for ‘impute_abundance’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘impute_abundance’ with signature ‘"RangedSummarizedExperiment"’: no definition for class “RangedSummarizedExperiment”
Note: wrong number of arguments to '!' 
Note: wrong number of arguments to '>' 
Note: wrong number of arguments to '>' 
Note: wrong number of arguments to '<' 
Note: wrong number of arguments to '>' 
Note: wrong number of arguments to '!' 
Note: wrong number of arguments to '<' 
Note: wrong number of arguments to '>' 
Note: wrong number of arguments to '<' 
Note: wrong number of arguments to '<' 
Note: wrong number of arguments to '!' 
Note: wrong number of arguments to '!' 
Note: wrong number of arguments to '^' 
Note: wrong number of arguments to '/' 
Note: wrong number of arguments to 'floor' 
Note: wrong number of arguments to '>' 
Note: wrong number of arguments to '<' 
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tidybulk)