Hannah Pliner
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/cicero |
| Branch: RELEASE_3_11 |
| Last Commit: 4b4bffc |
| Last Changed Date: 2020-08-30 10:22:51 -0400 (Sun, 30 Aug 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:17 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE cicero PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 299/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| cicero 1.6.2 Hannah Pliner
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: cicero |
| Version: 1.6.2 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/cicero_1.6.2.tar.gz && rm -rf cicero.buildbin-libdir && mkdir cicero.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cicero.buildbin-libdir cicero_1.6.2.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL cicero_1.6.2.zip && rm cicero_1.6.2.tar.gz cicero_1.6.2.zip |
| StartedAt: 2020-10-16 19:39:34 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:41:07 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 93.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/cicero_1.6.2.tar.gz && rm -rf cicero.buildbin-libdir && mkdir cicero.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cicero.buildbin-libdir cicero_1.6.2.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL cicero_1.6.2.zip && rm cicero_1.6.2.tar.gz cicero_1.6.2.zip
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install for i386
* installing *source* package 'cicero' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'cicero'
finding HTML links ... done
aggregate_by_cell_bin html
aggregate_nearby_peaks html
annotate_cds_by_site html
assemble_connections html
build_gene_activity_matrix html
cell_data html
cicero-package html
cicero_data html
compare_connections html
df_for_coords html
estimate_distance_parameter html
find_overlapping_ccans html
find_overlapping_coordinates html
gene_annotation_sample html
generate_ccans html
generate_cicero_models html
human.hg19.genome html
make_atac_cds html
make_cicero_cds html
make_sparse_matrix html
normalize_gene_activities html
plot_accessibility_in_pseudotime html
plot_connections html
ranges_for_coords html
run_cicero html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'cicero' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cicero' as cicero_1.6.2.zip
* DONE (cicero)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'cicero' successfully unpacked and MD5 sums checked