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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:PrecisionTrialDrawer.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings PrecisionTrialDrawer_1.4.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/PrecisionTrialDrawer.Rcheck'
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'PrecisionTrialDrawer/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'PrecisionTrialDrawer' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PrecisionTrialDrawer' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
panelDesigner  17.62   0.14   24.95
newCancerPanel 17.52   0.11   23.84
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
panelDesigner  11.61   0.13   17.47
newCancerPanel 11.55   0.11   18.06
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/PrecisionTrialDrawer_1.4.0.tar.gz && rm -rf PrecisionTrialDrawer.buildbin-libdir && mkdir PrecisionTrialDrawer.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PrecisionTrialDrawer.buildbin-libdir PrecisionTrialDrawer_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL PrecisionTrialDrawer_1.4.0.zip && rm PrecisionTrialDrawer_1.4.0.tar.gz PrecisionTrialDrawer_1.4.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  380k  100  380k    0     0  5520k      0 --:--:-- --:--:-- --:--:-- 6045k

install for i386

* installing *source* package 'PrecisionTrialDrawer' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
** help
*** installing help indices
  converting help for package 'PrecisionTrialDrawer'
    finding HTML links ... done
    CancerPanel-class                       html  
    PrecisionTrialDrawer-package            html  
    appendRepo                              html  
    coocMutexPlot                           html  
    coveragePlot                            html  
    coverageStackPlot                       html  
    cpArguments                             html  
    cpData                                  html  
    cpDataSubset                            html  
    cpDesign                                html  
    cpFreq                                  html  
    cpObj                                   html  
    cpObj2                                  html  
    dataExtractor                           html  
    filterFusions                           html  
    filterMutations                         html  
    getAlterations                          html  
    newCancerPanel                          html  
    panelDesigner                           html  
    panelOptimizer                          html  
    panelexample                            html  
    propPowerSampleSize                     html  
    saturationPlot                          html  
    showCancerStudy                         html  
    showTumorType                           html  
    subsetAlterations                       html  
    survPowerSampleSize                     html  
    survPowerSampleSize1Arm                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
** testing if installed package can be loaded from final location
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'PrecisionTrialDrawer' ...
** testing if installed package can be loaded
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
* MD5 sums
packaged installation of 'PrecisionTrialDrawer' as PrecisionTrialDrawer_1.4.0.zip
* DONE (PrecisionTrialDrawer)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'PrecisionTrialDrawer' successfully unpacked and MD5 sums checked