Maria Jose Nueda
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/maSigPro |
| Branch: RELEASE_3_10 |
| Last Commit: 7dd0dba |
| Last Changed Date: 2019-10-29 13:07:37 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:17:25 -0400 (Wed, 15 Apr 2020).
| Package 956/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| maSigPro 1.58.0 Maria Jose Nueda
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: maSigPro |
| Version: 1.58.0 |
| Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:maSigPro.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings maSigPro_1.58.0.tar.gz |
| StartedAt: 2020-04-15 04:27:52 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 04:33:37 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 344.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: maSigPro.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:maSigPro.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings maSigPro_1.58.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/maSigPro.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'maSigPro/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'maSigPro' version '1.58.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'maSigPro' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
PodiumChange 14.03 0.03 14.06
IsoPlot 12.03 0.03 12.06
getDS 11.97 0.05 12.06
ISOdata 11.61 0.05 11.66
seeDS 11.53 0.11 11.75
ISOdesign 11.51 0.00 11.51
tableDS 11.40 0.08 11.47
getDSPatterns 11.30 0.05 11.34
IsoModel 11.03 0.13 11.16
T.fit 5.66 0.00 5.65
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
IsoPlot 17.70 0.02 17.72
PodiumChange 17.41 0.02 17.42
getDSPatterns 17.36 0.05 17.42
IsoModel 17.18 0.13 17.30
ISOdesign 17.22 0.00 17.22
ISOdata 17.03 0.03 17.08
seeDS 16.82 0.00 16.83
getDS 16.57 0.08 16.66
tableDS 13.84 0.05 13.89
T.fit 7.59 0.02 7.61
maSigPro 5.43 0.00 5.43
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
maSigPro.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/maSigPro_1.58.0.tar.gz && rm -rf maSigPro.buildbin-libdir && mkdir maSigPro.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=maSigPro.buildbin-libdir maSigPro_1.58.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL maSigPro_1.58.0.zip && rm maSigPro_1.58.0.tar.gz maSigPro_1.58.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 1517k 100 1517k 0 0 16.0M 0 --:--:-- --:--:-- --:--:-- 16.6M
install for i386
* installing *source* package 'maSigPro' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'maSigPro'
finding HTML links ... done
ISOdata html
ISOdesign html
IsoModel html
IsoPlot html
NBdata html
NBdesign html
PlotGroups html
PlotProfiles html
PodiumChange html
T.fit html
average.rows html
data.abiotic html
edesign.abiotic html
edesignCT html
edesignDR html
get.siggenes html
getDS html
getDSPatterns html
i.rank html
maSigPro html
maSigProUsersGuide html
make.design.matrix html
p.vector html
position html
reg.coeffs html
see.genes html
seeDS html
stepback html
stepfor html
suma2Venn html
tableDS html
two.ways.stepback html
two.ways.stepfor html
** building package indices
** installing vignettes
'maSigPro.Rnw'
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'maSigPro' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'maSigPro' as maSigPro_1.58.0.zip
* DONE (maSigPro)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'maSigPro' successfully unpacked and MD5 sums checked
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maSigPro.Rcheck/examples_i386/maSigPro-Ex.timings
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maSigPro.Rcheck/examples_x64/maSigPro-Ex.timings
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