Multiple platform build/check report for BioC 3.10 - CHECK report for maSigPro on merida1

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings maSigPro_1.58.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.10-bioc/meat/maSigPro.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘maSigPro/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘maSigPro’ version ‘1.58.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘maSigPro’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                user system elapsed
seeDS         17.556  0.199  17.964
tableDS       17.437  0.199  17.827
getDSPatterns 17.402  0.209  17.811
getDS         17.270  0.229  17.671
ISOdata       17.039  0.287  17.448
ISOdesign     16.524  0.204  16.836
IsoModel      16.403  0.238  16.848
IsoPlot       16.386  0.197  16.719
PodiumChange  16.292  0.169  16.561
T.fit          7.337  0.036   7.406
maSigPro       5.751  0.029   5.833
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

Installation output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL maSigPro
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘maSigPro’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘maSigPro.Rnw’ 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (maSigPro)

Tests output

Example timings

name	user	system	elapsed
ISOdata	17.039	0.287	17.448
ISOdesign	16.524	0.204	16.836
IsoModel	16.403	0.238	16.848
IsoPlot	16.386	0.197	16.719
NBdata	0.001	0.001	0.002
NBdesign	0.002	0.001	0.003
PlotGroups	0.049	0.003	0.060
PlotProfiles	0.012	0.002	0.019
PodiumChange	16.292	0.169	16.561
T.fit	7.337	0.036	7.406
average.rows	0.005	0.000	0.005
data.abiotic	0.003	0.001	0.004
edesign.abiotic	0.002	0.001	0.003
edesignCT	0.001	0.001	0.002
edesignDR	0.001	0.001	0.001
get.siggenes	3.576	0.013	3.611
getDS	17.270	0.229	17.671
getDSPatterns	17.402	0.209	17.811
i.rank	0	0	0
maSigPro	5.751	0.029	5.833
maSigProUsersGuide	0.003	0.002	0.006
make.design.matrix	0.010	0.007	0.016
p.vector	2.655	0.019	2.698
position	0.000	0.000	0.001
reg.coeffs	0.000	0.000	0.001
see.genes	1.026	0.133	1.338
seeDS	17.556	0.199	17.964
stepback	0.035	0.001	0.036
stepfor	0.145	0.001	0.146
suma2Venn	0.029	0.003	0.040
tableDS	17.437	0.199	17.827
two.ways.stepback	0.105	0.001	0.106
two.ways.stepfor	0.148	0.001	0.149

CHECK report for maSigPro on merida1

Summary

Command output

Installation output

Tests output

Example timings