Yuting Dai
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/flowSpy |
| Branch: RELEASE_3_10 |
| Last Commit: 24cb50a |
| Last Changed Date: 2020-03-19 02:44:36 -0400 (Thu, 19 Mar 2020) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:33:29 -0400 (Wed, 15 Apr 2020).
| Package 601/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| flowSpy 1.0.4 Yuting Dai
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: flowSpy |
| Version: 1.0.4 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/flowSpy_1.0.4.tar.gz && rm -rf flowSpy.buildbin-libdir && mkdir flowSpy.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowSpy.buildbin-libdir flowSpy_1.0.4.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL flowSpy_1.0.4.zip && rm flowSpy_1.0.4.tar.gz flowSpy_1.0.4.zip |
| StartedAt: 2020-04-14 20:29:11 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 20:30:51 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 99.8 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/flowSpy_1.0.4.tar.gz && rm -rf flowSpy.buildbin-libdir && mkdir flowSpy.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowSpy.buildbin-libdir flowSpy_1.0.4.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL flowSpy_1.0.4.zip && rm flowSpy_1.0.4.tar.gz flowSpy_1.0.4.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 2570k 100 2570k 0 0 14.3M 0 --:--:-- --:--:-- --:--:-- 14.5M
install for i386
* installing *source* package 'flowSpy' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c jaccard_coeff.cpp -o jaccard_coeff.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o flowSpy.dll tmp.def RcppExports.o jaccard_coeff.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/flowSpy.buildbin-libdir/00LOCK-flowSpy/00new/flowSpy/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'flowSpy'
finding HTML links ... done
FSPY-class html
Rphenograph html
buildTree html
constraintMatrix html
correctBatchFSPY html
createFSPY html
defLeafCells html
defRootCells html
fetchCell html
fetchClustMeta html
fetchPlotMeta html
find_neighbors html
flowSpy-package html
gatingMatrix html
plot2D html
plot3D html
plotBranchHeatmap html
plotCluster html
plotClusterHeatmap html
plotHeatmap html
plotMarkerDensity html
plotPieCluster html
plotPieTree html
plotPseudotimeDensity html
plotPseudotimeTraj html
plotTrajHeatmap html
plotTree html
plotViolin html
processingCluster html
runClara html
runCluster html
runDiff html
runDiffusionMap html
runExprsExtract html
runExprsMerge html
runFastPCA html
runHclust html
runKNN html
runKmeans html
runMclust html
runPhenograph html
runPseudotime html
runSOM html
finding level-2 HTML links ... done
runTSNE html
runUMAP html
runWalk html
show-FSPY-method html
subsetFSPY html
updateClustMeta html
updatePlotMeta html
** building package indices
** installing vignettes
'Quick_start.Rmd' using 'UTF-8'
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'flowSpy' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c jaccard_coeff.cpp -o jaccard_coeff.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o flowSpy.dll tmp.def RcppExports.o jaccard_coeff.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/flowSpy.buildbin-libdir/flowSpy/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowSpy' as flowSpy_1.0.4.zip
* DONE (flowSpy)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'flowSpy' successfully unpacked and MD5 sums checked