Yuting Dai
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/flowSpy |
| Branch: RELEASE_3_10 |
| Last Commit: 24cb50a |
| Last Changed Date: 2020-03-19 02:44:36 -0400 (Thu, 19 Mar 2020) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:50:23 -0400 (Wed, 15 Apr 2020).
| Package 601/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| flowSpy 1.0.4 Yuting Dai
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |
| Package: flowSpy |
| Version: 1.0.4 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:flowSpy.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings flowSpy_1.0.4.tar.gz |
| StartedAt: 2020-04-15 02:23:07 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 02:28:39 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 331.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: flowSpy.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:flowSpy.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings flowSpy_1.0.4.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.10-bioc/meat/flowSpy.Rcheck’ * using R version 3.6.3 (2020-02-29) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘flowSpy/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘flowSpy’ version ‘1.0.4’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘flowSpy’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.10-bioc/meat/flowSpy.Rcheck/00check.log’ for details.
flowSpy.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL flowSpy ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘flowSpy’ ... ** using staged installation ** libs clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c jaccard_coeff.cpp -o jaccard_coeff.o clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o flowSpy.so RcppExports.o jaccard_coeff.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/3.6/Resources/library/00LOCK-flowSpy/00new/flowSpy/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘Quick_start.Rmd’ using ‘UTF-8’ ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (flowSpy)
flowSpy.Rcheck/flowSpy-Ex.timings
| name | user | system | elapsed | |
| Rphenograph | 3.303 | 0.023 | 3.349 | |
| buildTree | 0.001 | 0.001 | 0.002 | |
| constraintMatrix | 0.035 | 0.000 | 0.035 | |
| correctBatchFSPY | 0.000 | 0.001 | 0.000 | |
| createFSPY | 0.001 | 0.000 | 0.001 | |
| defLeafCells | 0.001 | 0.000 | 0.001 | |
| defRootCells | 0.001 | 0.001 | 0.001 | |
| fetchCell | 0 | 0 | 0 | |
| fetchClustMeta | 0.000 | 0.000 | 0.001 | |
| fetchPlotMeta | 0.001 | 0.000 | 0.001 | |
| find_neighbors | 0.002 | 0.001 | 0.002 | |
| flowSpy-package | 0 | 0 | 0 | |
| gatingMatrix | 0.022 | 0.001 | 0.024 | |
| plot2D | 0.034 | 0.001 | 0.035 | |
| plot3D | 0.001 | 0.000 | 0.001 | |
| plotBranchHeatmap | 0.001 | 0.000 | 0.002 | |
| plotCluster | 0.002 | 0.000 | 0.002 | |
| plotClusterHeatmap | 0.000 | 0.000 | 0.001 | |
| plotHeatmap | 0.001 | 0.000 | 0.000 | |
| plotMarkerDensity | 0.001 | 0.000 | 0.001 | |
| plotPieCluster | 0.002 | 0.000 | 0.002 | |
| plotPieTree | 0.000 | 0.000 | 0.001 | |
| plotPseudotimeDensity | 0.001 | 0.000 | 0.001 | |
| plotPseudotimeTraj | 0.001 | 0.000 | 0.001 | |
| plotTrajHeatmap | 0.001 | 0.000 | 0.001 | |
| plotTree | 0.003 | 0.000 | 0.003 | |
| plotViolin | 0.001 | 0.000 | 0.001 | |
| processingCluster | 0.001 | 0.000 | 0.002 | |
| runClara | 0.000 | 0.000 | 0.001 | |
| runCluster | 0.004 | 0.000 | 0.004 | |
| runDiff | 0 | 0 | 0 | |
| runDiffusionMap | 0.000 | 0.000 | 0.001 | |
| runExprsExtract | 0.001 | 0.000 | 0.002 | |
| runExprsMerge | 0.001 | 0.001 | 0.002 | |
| runFastPCA | 0.001 | 0.000 | 0.001 | |
| runKNN | 0 | 0 | 0 | |
| runKmeans | 0.000 | 0.000 | 0.001 | |
| runMclust | 0.001 | 0.000 | 0.001 | |
| runPhenograph | 0.000 | 0.000 | 0.001 | |
| runPseudotime | 0.005 | 0.000 | 0.005 | |
| runSOM | 0.000 | 0.000 | 0.001 | |
| runTSNE | 0.001 | 0.000 | 0.001 | |
| runUMAP | 0.000 | 0.001 | 0.001 | |
| runWalk | 0.001 | 0.000 | 0.000 | |
| show-FSPY-method | 0 | 0 | 0 | |
| subsetFSPY | 0.000 | 0.001 | 0.001 | |
| updateClustMeta | 0.001 | 0.000 | 0.001 | |
| updatePlotMeta | 0.000 | 0.000 | 0.001 | |