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BioC experimental data: CHECK report for seqc on zin1

This page was generated on 2015-04-08 17:40:53 -0700 (Wed, 08 Apr 2015).

Package 187/219HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
seqc 1.0.0
Yang Liao and Wei Shi
Snapshot Date: 2015-04-08 06:15:26 -0700 (Wed, 08 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_0/experiment/pkgs/seqc
Last Changed Rev: 3139 / Revision: 3266
Last Changed Date: 2014-12-01 21:33:32 -0800 (Mon, 01 Dec 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK [ WARNINGS ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  WARNINGS  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  WARNINGS  OK 

Summary

Package: seqc
Version: 1.0.0
Command: /home/biocbuild/bbs-3.0-bioc/R/bin/R CMD check --no-vignettes --timings seqc_1.0.0.tar.gz
StartedAt: 2015-04-08 08:56:02 -0700 (Wed, 08 Apr 2015)
EndedAt: 2015-04-08 09:01:01 -0700 (Wed, 08 Apr 2015)
EllapsedTime: 299.1 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: seqc.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.0-bioc/R/bin/R CMD check --no-vignettes --timings seqc_1.0.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.0-data-experiment/meat/seqc.Rcheck’
* using R version 3.1.3 (2015-03-09)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘seqc/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘seqc’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘seqc’ can be installed ... [215s/218s] OK
* checking installed package size ... NOTE
  installed size is 306.9Mb
  sub-directories of 1Mb or more:
    data  306.6Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Invalid citation information in ‘inst/CITATION’:
  Error in tools:::.parse_CITATION_file(file, meta$Encoding): non-ASCII input in a CITATION file without a declared encoding
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [1s/1s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

WARNING: There was 1 warning.
NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-3.0-data-experiment/meat/seqc.Rcheck/00check.log’
for details.

seqc.Rcheck/00install.out:

* installing *source* package ‘seqc’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (seqc)

seqc.Rcheck/seqc-Ex.timings:

nameusersystemelapsed
FCData0.7320.0880.847
FCJunctions0.0080.0000.007
SEQC-package0.0160.0000.015
taqman0.0120.0000.013