To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("seqc")
In most cases, you don't need to download the package archive at all.
Bioconductor version: 3.0
The SEQC/MAQC-III Consortium has produced benchmark RNA-seq data for the assessment of RNA sequencing technologies and data analysis methods (Nat Biotechnol, 2014). Billions of sequence reads have been generated from ten different sequencing sites. This package contains the summarized read count data for ~2000 sequencing libraries. It also includes all the exon-exon junctions discovered from the study. TaqMan RT-PCR data for ~1000 genes and ERCC spike-in sequence data are included in this package as well.
Author: Yang Liao and Wei Shi
Maintainer: Yang Liao <liao at wehi.edu.au> and Wei Shi <shi at wehi.edu.au>
Citation (from within R,
enter citation("seqc")
):
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("seqc")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("seqc")
R Script | SEQC Vignette | |
Reference Manual | ||
Text | NEWS |
biocViews | ExperimentData, ExpressionData, GeneExpression, HighThroughputSequencingData, RNAExpressionData, RNASeq, RNAseqData, Sequencing |
Version | 1.0.0 |
License | GPL-3 |
Depends | R (>= 2.10) |
Imports | |
LinkingTo | |
Suggests | |
SystemRequirements | |
Enhances | |
URL | http://bioconductor.org/packages/release/data/experiment/html/seqc.html |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | seqc_1.0.0.tar.gz |
Windows Binary | seqc_1.0.0.zip |
Mac OS X 10.6 (Snow Leopard) | seqc_1.0.0.tgz |
Mac OS X 10.9 (Mavericks) | seqc_1.0.0.tgz |
Browse/checkout source | (username/password: readonly) |
Package Downloads Report | Download Stats |
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